Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24420

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
5,471,004	+				+1.0
5,471,004	+				+0.3
5,471,005	-				+0.2
5,471,010	+				+2.2
5,471,010	+				+1.4
5,471,011	-				+0.0
5,471,024	+				-1.0
5,471,065	-				+0.5
5,471,233	+		PFLU_RS24415	0.30	+0.3
5,471,233	+		PFLU_RS24415	0.30	+0.6
5,471,233	+		PFLU_RS24415	0.30	+0.0
5,471,233	+		PFLU_RS24415	0.30	-1.2
5,471,234	-		PFLU_RS24415	0.30	+0.4
5,471,234	-		PFLU_RS24415	0.30	-0.7
5,471,244	+		PFLU_RS24415	0.32	+1.4
5,471,244	+		PFLU_RS24415	0.32	-1.0
5,471,244	+		PFLU_RS24415	0.32	+2.2
5,471,244	+		PFLU_RS24415	0.32	+0.0
5,471,245	-		PFLU_RS24415	0.32	+0.3
5,471,245	-		PFLU_RS24415	0.32	+0.6
5,471,245	-		PFLU_RS24415	0.32	+0.6
5,471,245	-		PFLU_RS24415	0.32	-0.7
5,471,245	-		PFLU_RS24415	0.32	+0.0
5,471,245	-		PFLU_RS24415	0.32	-1.3
5,471,245	-		PFLU_RS24415	0.32	+1.6
5,471,279	-		PFLU_RS24415	0.37	+0.7
5,471,334	+		PFLU_RS24415	0.44	+1.6
5,471,334	+		PFLU_RS24415	0.44	-2.4
5,471,358	+		PFLU_RS24415	0.48	+0.9
5,471,358	+		PFLU_RS24415	0.48	-1.0
5,471,550	+		PFLU_RS24415	0.74	-0.9
5,471,550	+		PFLU_RS24415	0.74	+0.0
5,471,550	+		PFLU_RS24415	0.74	+1.1
5,471,550	+		PFLU_RS24415	0.74	+0.2
5,471,550	+		PFLU_RS24415	0.74	-1.4
5,471,550	+		PFLU_RS24415	0.74	+0.4
5,471,551	-		PFLU_RS24415	0.74	-0.2
5,471,551	-		PFLU_RS24415	0.74	+0.4
5,471,551	-		PFLU_RS24415	0.74	+0.5
5,471,551	-		PFLU_RS24415	0.74	+0.1
5,471,551	-		PFLU_RS24415	0.74	+1.2
5,471,551	-		PFLU_RS24415	0.74	-0.1
5,471,554	+		PFLU_RS24415	0.75	-1.1
5,471,554	+		PFLU_RS24415	0.75	-0.7
5,471,554	+		PFLU_RS24415	0.75	+1.0
5,471,554	+		PFLU_RS24415	0.75	-0.8
5,471,554	+		PFLU_RS24415	0.75	-1.2
5,471,554	+		PFLU_RS24415	0.75	+0.7
5,471,554	+		PFLU_RS24415	0.75	-0.6
5,471,555	-		PFLU_RS24415	0.75	+0.6
5,471,555	-		PFLU_RS24415	0.75	-0.5
5,471,555	-		PFLU_RS24415	0.75	+0.6
5,471,555	-		PFLU_RS24415	0.75	-0.1
5,471,555	-		PFLU_RS24415	0.75	-0.6
5,471,555	-		PFLU_RS24415	0.75	+1.4
5,471,577	+		PFLU_RS24415	0.78	-0.6
5,471,578	-		PFLU_RS24415	0.78	-1.0
5,471,578	-		PFLU_RS24415	0.78	-0.3
5,471,578	-		PFLU_RS24415	0.78	+0.6
5,471,641	+		PFLU_RS24415	0.87	-0.0
5,471,642	-		PFLU_RS24415	0.87	-0.8
5,471,679	+				-0.0
5,471,702	+				-1.9
5,471,702	+				-1.2
5,471,702	+				-0.4
5,471,702	+				-0.6
5,471,702	+				+1.0
5,471,702	+				-0.4
5,471,702	+				-1.7
5,471,702	+				-1.6
5,471,703	-				+0.7
5,471,703	-				+0.8
5,471,703	-				-0.5
5,471,703	-				+1.0
5,471,703	-				-0.7
5,471,703	-				+0.4
5,471,703	-				-0.4
5,471,703	-				+0.0
5,471,703	-				+0.4
5,471,703	-				+0.4
5,471,703	-				-0.2
5,471,740	+				-1.4
5,471,741	-				-0.4
5,471,754	+				-0.5
5,471,754	+				-0.6
5,471,754	+				+0.0
5,471,754	+				-1.0
5,471,754	+				+1.8
5,471,754	+				+0.6
5,471,754	+				-0.7
5,471,754	+				-1.0
5,471,754	+				-0.6
5,471,754	+				-1.1
5,471,754	+				+0.2
5,471,754	+				+1.0
5,471,754	+				+0.6
5,471,754	+				+0.6
5,471,754	+				+0.7
5,471,755	-				+0.7
5,471,755	-				-0.9
5,471,755	-				+0.2
5,471,755	-				-2.1
5,471,755	-				+0.2
5,471,755	-				-0.4
5,471,755	-				+0.5
5,471,755	-				-0.0
5,471,755	-				-0.3
5,471,755	-				-2.4
5,471,755	-				-1.0
5,471,755	-				+1.0
5,471,755	-				+1.2
5,471,755	-				+0.4
5,471,755	-				+0.9
5,471,755	-				+1.1
5,471,755	-				-0.5
5,471,758	+				+0.8
5,471,758	+				-0.7
5,471,758	+				+0.5
5,471,758	+				-1.3
5,471,758	+				+0.6
5,471,758	+				-0.4
5,471,758	+				+1.1
5,471,758	+				-1.2
5,471,758	+				+1.4
5,471,758	+				+0.4
5,471,758	+				-1.5
5,471,758	+				+1.8
5,471,758	+				+0.0
5,471,758	+				-0.2
5,471,758	+				+0.0
5,471,758	+				+0.0
5,471,758	+				+1.3
5,471,758	+				+0.6
5,471,758	+				+2.1
5,471,759	-				+0.0
5,471,759	-				+0.4
5,471,759	-				-0.3
5,471,759	-				+0.2
5,471,759	-				+0.6
5,471,759	-				+0.8
5,471,759	-				+1.4
5,471,759	-				+0.5
5,471,759	-				-0.2
5,471,759	-				+0.1
5,471,759	-				-0.7
5,471,759	-				-0.5
5,471,759	-				-1.2
5,471,759	-				-0.6
5,471,759	-				+0.6
5,471,759	-				+0.3
5,471,759	-				+0.0
5,471,759	-				-1.5
5,471,759	-				-0.4
5,471,776	+				+0.4
5,471,776	+				+0.6
5,471,777	-				-0.6
5,471,784	+				-1.7
5,471,785	-				+1.4
5,471,843	+		PFLU_RS24420	0.15	-0.5
5,471,843	+		PFLU_RS24420	0.15	+1.3
5,471,843	+		PFLU_RS24420	0.15	-1.2
5,471,905	-		PFLU_RS24420	0.24	-0.1
5,471,978	+		PFLU_RS24420	0.35	+1.0
5,472,000	+		PFLU_RS24420	0.38	-2.0
5,472,029	+		PFLU_RS24420	0.43	+1.2
5,472,029	+		PFLU_RS24420	0.43	+0.1
5,472,029	+		PFLU_RS24420	0.43	+0.6
5,472,029	+		PFLU_RS24420	0.43	-2.5
5,472,029	+		PFLU_RS24420	0.43	-1.1
5,472,030	-		PFLU_RS24420	0.43	-1.1
5,472,030	-		PFLU_RS24420	0.43	+0.4
5,472,030	-		PFLU_RS24420	0.43	+0.2
5,472,071	+		PFLU_RS24420	0.49	+1.4
5,472,071	+		PFLU_RS24420	0.49	-3.1
5,472,071	+		PFLU_RS24420	0.49	-0.7
5,472,072	-		PFLU_RS24420	0.49	+0.8
5,472,115	-		PFLU_RS24420	0.55	-0.3
5,472,297	+		PFLU_RS24420	0.82	+0.6
5,472,298	-		PFLU_RS24420	0.82	-0.2
5,472,298	-		PFLU_RS24420	0.82	-0.7
5,472,298	-		PFLU_RS24420	0.82	+0.8
5,472,298	-		PFLU_RS24420	0.82	-1.1
5,472,358	+				-0.4
5,472,358	+				-0.1
5,472,358	+				+1.0
5,472,358	+				+1.3
5,472,359	-				+1.4
5,472,382	+				+1.0
5,472,382	+				+1.1
5,472,413	+				+3.6
5,472,413	+				+0.8
5,472,413	+				+0.2
5,472,413	+				-0.3
5,472,414	-				+0.1
5,472,414	-				-0.9
5,472,434	+				-0.6
5,472,434	+				-0.4
5,472,434	+				+0.0
5,472,434	+				+0.3
5,472,435	-				-0.3
5,472,435	-				+0.6
5,472,444	+				+1.1
5,472,444	+				-0.2
5,472,444	+				-0.3
5,472,444	+				+0.0
5,472,444	+				-0.7
5,472,445	-				+0.5
5,472,445	-				-0.1
5,472,445	-				+0.2
5,472,445	-				+1.0
5,472,445	-				-1.0
5,472,445	-				+0.7
5,472,445	-				-0.4
5,472,452	+				+0.2
5,472,452	+				-1.4
5,472,452	+				+0.9
5,472,452	+				+0.6
5,472,452	+				-0.8
5,472,453	-				+0.4
5,472,453	-				+2.2
5,472,453	-				+0.5
5,472,453	-				-0.6
5,472,453	-				-0.1
5,472,453	-				-0.4
5,472,453	-				-1.0
5,472,453	-				-0.6
5,472,530	-				-0.2
5,472,569	-				+0.7
5,472,569	-				+0.6
5,472,602	+				+0.2
5,472,869	+		PFLU_RS24425	0.20	+0.0
5,472,869	+		PFLU_RS24425	0.20	-0.2
5,472,869	+		PFLU_RS24425	0.20	+0.6
5,472,869	+		PFLU_RS24425	0.20	-0.6
5,472,870	-		PFLU_RS24425	0.21	-0.5
5,472,870	-		PFLU_RS24425	0.21	+2.6
5,472,870	-		PFLU_RS24425	0.21	-0.6
5,472,870	-		PFLU_RS24425	0.21	+1.2
5,472,887	-		PFLU_RS24425	0.22	-0.4
5,472,887	-		PFLU_RS24425	0.22	-0.5
5,472,926	+		PFLU_RS24425	0.25	+1.0
5,472,927	-		PFLU_RS24425	0.25	+0.6
5,472,956	+		PFLU_RS24425	0.27	-0.6
5,472,956	+		PFLU_RS24425	0.27	+1.1
5,472,956	+		PFLU_RS24425	0.27	+0.2
5,472,956	+		PFLU_RS24425	0.27	+0.8
5,472,956	+		PFLU_RS24425	0.27	-0.7
5,472,956	+		PFLU_RS24425	0.27	-1.7
5,472,957	-		PFLU_RS24425	0.27	-0.4
5,472,957	-		PFLU_RS24425	0.27	+0.5
5,472,957	-		PFLU_RS24425	0.27	-0.2
5,472,957	-		PFLU_RS24425	0.27	+0.6
5,472,957	-		PFLU_RS24425	0.27	-0.4
5,472,975	+		PFLU_RS24425	0.29	-0.6
5,472,975	+		PFLU_RS24425	0.29	+0.8
5,472,975	+		PFLU_RS24425	0.29	+3.9
5,472,975	+		PFLU_RS24425	0.29	+0.9
5,472,976	-		PFLU_RS24425	0.29	+0.6
5,472,976	-		PFLU_RS24425	0.29	-0.2
5,473,006	+		PFLU_RS24425	0.31	+0.6
5,473,006	+		PFLU_RS24425	0.31	+0.9
5,473,006	+		PFLU_RS24425	0.31	+1.1
5,473,006	+		PFLU_RS24425	0.31	-0.8
5,473,006	+		PFLU_RS24425	0.31	-0.1
5,473,007	-		PFLU_RS24425	0.31	+0.6
5,473,007	-		PFLU_RS24425	0.31	+0.6
5,473,135	+		PFLU_RS24425	0.41	+0.7
5,473,135	+		PFLU_RS24425	0.41	+1.1
5,473,135	+		PFLU_RS24425	0.41	+0.1
5,473,136	-		PFLU_RS24425	0.41	+0.9
5,473,136	-		PFLU_RS24425	0.41	+0.3
5,473,201	+		PFLU_RS24425	0.46	-1.7
5,473,201	+		PFLU_RS24425	0.46	+0.7
5,473,202	-		PFLU_RS24425	0.46	+0.9
5,473,202	-		PFLU_RS24425	0.46	-0.5
5,473,202	-		PFLU_RS24425	0.46	+0.6
5,473,202	-		PFLU_RS24425	0.46	+0.3
5,473,202	-		PFLU_RS24425	0.46	-0.3
5,473,202	-		PFLU_RS24425	0.46	+2.1
5,473,231	+		PFLU_RS24425	0.49	+0.5
5,473,231	+		PFLU_RS24425	0.49	-1.2
5,473,231	+		PFLU_RS24425	0.49	-2.3
5,473,231	+		PFLU_RS24425	0.49	+2.6
5,473,231	+		PFLU_RS24425	0.49	+0.4
5,473,231	+		PFLU_RS24425	0.49	-0.3
5,473,231	+		PFLU_RS24425	0.49	+1.6
5,473,231	+		PFLU_RS24425	0.49	-1.2
5,473,231	+		PFLU_RS24425	0.49	+0.8
5,473,231	+		PFLU_RS24425	0.49	+1.1
5,473,231	+		PFLU_RS24425	0.49	+0.4
5,473,232	-		PFLU_RS24425	0.49	+0.7
5,473,232	-		PFLU_RS24425	0.49	+0.9
5,473,232	-		PFLU_RS24425	0.49	-0.9
5,473,232	-		PFLU_RS24425	0.49	-0.2
5,473,232	-		PFLU_RS24425	0.49	-0.5
5,473,232	-		PFLU_RS24425	0.49	-0.3
5,473,232	-		PFLU_RS24425	0.49	+0.9
5,473,232	-		PFLU_RS24425	0.49	+0.1
5,473,232	-		PFLU_RS24425	0.49	+0.4
5,473,232	-		PFLU_RS24425	0.49	-0.5
5,473,242	+		PFLU_RS24425	0.50	-0.7
5,473,242	+		PFLU_RS24425	0.50	+0.0
5,473,242	+		PFLU_RS24425	0.50	-1.4
5,473,242	+		PFLU_RS24425	0.50	-0.8
5,473,243	-		PFLU_RS24425	0.50	+2.1
5,473,243	-		PFLU_RS24425	0.50	-1.2
5,473,332	-		PFLU_RS24425	0.57	+0.0
5,473,381	+		PFLU_RS24425	0.60	+1.2
5,473,381	+		PFLU_RS24425	0.60	+0.0
5,473,381	+		PFLU_RS24425	0.60	+0.3
5,473,381	+		PFLU_RS24425	0.60	+1.6
5,473,381	+		PFLU_RS24425	0.60	-2.0
5,473,381	+		PFLU_RS24425	0.60	+0.3
5,473,381	+		PFLU_RS24425	0.60	-1.7
5,473,381	+		PFLU_RS24425	0.60	+0.4
5,473,382	-		PFLU_RS24425	0.60	-1.2
5,473,382	-		PFLU_RS24425	0.60	-1.4
5,473,382	-		PFLU_RS24425	0.60	-0.1
5,473,382	-		PFLU_RS24425	0.60	+1.3
5,473,382	-		PFLU_RS24425	0.60	-0.1
5,473,382	-		PFLU_RS24425	0.60	+0.3
5,473,382	-		PFLU_RS24425	0.60	+0.5