Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21000

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20990 and ABZR86_RS20995 are separated by 5 nucleotidesABZR86_RS20995 and ABZR86_RS21000 are separated by 156 nucleotidesABZR86_RS21000 and ABZR86_RS21005 are separated by 190 nucleotides ABZR86_RS20990: ABZR86_RS20990 - hypothetical protein, at 171,540 to 172,115 _RS20990 ABZR86_RS20995: ABZR86_RS20995 - TetR/AcrR family transcriptional regulator, at 172,121 to 172,750 _RS20995 ABZR86_RS21000: ABZR86_RS21000 - hypothetical protein, at 172,907 to 173,395 _RS21000 ABZR86_RS21005: ABZR86_RS21005 - omptin family outer membrane protease, at 173,586 to 174,575 _RS21005 Position (kb) 172 173 174Strain fitness (log2 ratio) -2 -1 0 1at 171.992 kb on - strand, within ABZR86_RS20990at 171.992 kb on - strand, within ABZR86_RS20990at 172.140 kb on + strandat 172.261 kb on - strand, within ABZR86_RS20995at 172.337 kb on + strand, within ABZR86_RS20995at 172.346 kb on + strand, within ABZR86_RS20995at 172.347 kb on - strand, within ABZR86_RS20995at 172.347 kb on - strand, within ABZR86_RS20995at 172.347 kb on - strand, within ABZR86_RS20995at 172.347 kb on - strand, within ABZR86_RS20995at 172.599 kb on + strand, within ABZR86_RS20995at 172.660 kb on - strand, within ABZR86_RS20995at 172.812 kb on + strandat 172.980 kb on - strand, within ABZR86_RS21000at 173.252 kb on + strand, within ABZR86_RS21000at 173.253 kb on - strand, within ABZR86_RS21000at 173.327 kb on + strand, within ABZR86_RS21000at 173.327 kb on + strand, within ABZR86_RS21000at 173.328 kb on - strand, within ABZR86_RS21000at 173.328 kb on - strand, within ABZR86_RS21000at 173.328 kb on - strand, within ABZR86_RS21000at 173.328 kb on - strand, within ABZR86_RS21000at 173.328 kb on - strand, within ABZR86_RS21000at 173.328 kb on - strand, within ABZR86_RS21000at 173.366 kb on + strandat 173.367 kb on - strandat 173.367 kb on - strandat 173.367 kb on - strandat 173.393 kb on + strandat 173.479 kb on + strandat 173.578 kb on + strandat 173.578 kb on + strandat 173.579 kb on - strandat 173.591 kb on + strandat 173.591 kb on + strandat 173.751 kb on + strand, within ABZR86_RS21005at 173.751 kb on + strand, within ABZR86_RS21005at 173.751 kb on + strand, within ABZR86_RS21005at 173.751 kb on + strand, within ABZR86_RS21005at 173.752 kb on - strand, within ABZR86_RS21005at 173.752 kb on - strand, within ABZR86_RS21005at 173.752 kb on - strand, within ABZR86_RS21005at 173.757 kb on + strand, within ABZR86_RS21005at 173.757 kb on + strand, within ABZR86_RS21005at 173.839 kb on - strand, within ABZR86_RS21005at 173.913 kb on + strand, within ABZR86_RS21005at 174.105 kb on + strand, within ABZR86_RS21005at 174.105 kb on + strand, within ABZR86_RS21005at 174.105 kb on + strand, within ABZR86_RS21005at 174.105 kb on + strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.107 kb on + strand, within ABZR86_RS21005at 174.107 kb on + strand, within ABZR86_RS21005at 174.107 kb on + strand, within ABZR86_RS21005at 174.107 kb on + strand, within ABZR86_RS21005at 174.108 kb on - strand, within ABZR86_RS21005at 174.108 kb on - strand, within ABZR86_RS21005at 174.108 kb on - strand, within ABZR86_RS21005at 174.111 kb on + strand, within ABZR86_RS21005at 174.111 kb on + strand, within ABZR86_RS21005at 174.112 kb on - strand, within ABZR86_RS21005at 174.112 kb on - strand, within ABZR86_RS21005at 174.182 kb on + strand, within ABZR86_RS21005at 174.182 kb on + strand, within ABZR86_RS21005at 174.183 kb on - strand, within ABZR86_RS21005at 174.200 kb on + strand, within ABZR86_RS21005at 174.200 kb on + strand, within ABZR86_RS21005at 174.200 kb on + strand, within ABZR86_RS21005at 174.200 kb on + strand, within ABZR86_RS21005at 174.201 kb on - strand, within ABZR86_RS21005at 174.201 kb on - strand, within ABZR86_RS21005at 174.201 kb on - strand, within ABZR86_RS21005at 174.204 kb on + strand, within ABZR86_RS21005at 174.205 kb on - strand, within ABZR86_RS21005at 174.205 kb on - strand, within ABZR86_RS21005at 174.228 kb on + strand, within ABZR86_RS21005at 174.250 kb on - strand, within ABZR86_RS21005at 174.273 kb on + strand, within ABZR86_RS21005at 174.273 kb on + strand, within ABZR86_RS21005at 174.273 kb on + strand, within ABZR86_RS21005at 174.274 kb on - strand, within ABZR86_RS21005at 174.274 kb on - strand, within ABZR86_RS21005at 174.274 kb on - strand, within ABZR86_RS21005

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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171,992 - ABZR86_RS20990 0.78 +0.0
171,992 - ABZR86_RS20990 0.78 +0.6
172,140 + +0.7
172,261 - ABZR86_RS20995 0.22 -0.4
172,337 + ABZR86_RS20995 0.34 -0.8
172,346 + ABZR86_RS20995 0.36 -1.2
172,347 - ABZR86_RS20995 0.36 +0.2
172,347 - ABZR86_RS20995 0.36 -0.6
172,347 - ABZR86_RS20995 0.36 -0.1
172,347 - ABZR86_RS20995 0.36 -0.8
172,599 + ABZR86_RS20995 0.76 -0.2
172,660 - ABZR86_RS20995 0.86 -0.7
172,812 + -0.2
172,980 - ABZR86_RS21000 0.15 +0.1
173,252 + ABZR86_RS21000 0.71 +0.5
173,253 - ABZR86_RS21000 0.71 -0.1
173,327 + ABZR86_RS21000 0.86 +1.3
173,327 + ABZR86_RS21000 0.86 -0.1
173,328 - ABZR86_RS21000 0.86 -2.2
173,328 - ABZR86_RS21000 0.86 -0.0
173,328 - ABZR86_RS21000 0.86 +0.2
173,328 - ABZR86_RS21000 0.86 -0.3
173,328 - ABZR86_RS21000 0.86 -0.7
173,328 - ABZR86_RS21000 0.86 +0.5
173,366 + -1.1
173,367 - -0.2
173,367 - -0.4
173,367 - +0.0
173,393 + -0.3
173,479 + +0.0
173,578 + -0.3
173,578 + +0.2
173,579 - +0.4
173,591 + +0.2
173,591 + +0.3
173,751 + ABZR86_RS21005 0.17 -0.1
173,751 + ABZR86_RS21005 0.17 +0.5
173,751 + ABZR86_RS21005 0.17 +0.3
173,751 + ABZR86_RS21005 0.17 -1.3
173,752 - ABZR86_RS21005 0.17 -0.4
173,752 - ABZR86_RS21005 0.17 +0.6
173,752 - ABZR86_RS21005 0.17 -1.2
173,757 + ABZR86_RS21005 0.17 -0.7
173,757 + ABZR86_RS21005 0.17 +0.4
173,839 - ABZR86_RS21005 0.26 -0.3
173,913 + ABZR86_RS21005 0.33 -0.1
174,105 + ABZR86_RS21005 0.52 -0.6
174,105 + ABZR86_RS21005 0.52 -0.8
174,105 + ABZR86_RS21005 0.52 +0.3
174,105 + ABZR86_RS21005 0.52 +0.0
174,106 - ABZR86_RS21005 0.53 +0.1
174,106 - ABZR86_RS21005 0.53 -0.1
174,106 - ABZR86_RS21005 0.53 -0.1
174,106 - ABZR86_RS21005 0.53 -0.0
174,106 - ABZR86_RS21005 0.53 -0.3
174,106 - ABZR86_RS21005 0.53 -0.0
174,107 + ABZR86_RS21005 0.53 -0.5
174,107 + ABZR86_RS21005 0.53 -1.0
174,107 + ABZR86_RS21005 0.53 +0.3
174,107 + ABZR86_RS21005 0.53 -1.0
174,108 - ABZR86_RS21005 0.53 -0.3
174,108 - ABZR86_RS21005 0.53 +0.9
174,108 - ABZR86_RS21005 0.53 -0.9
174,111 + ABZR86_RS21005 0.53 -0.5
174,111 + ABZR86_RS21005 0.53 -0.0
174,112 - ABZR86_RS21005 0.53 +0.2
174,112 - ABZR86_RS21005 0.53 -0.3
174,182 + ABZR86_RS21005 0.60 +0.5
174,182 + ABZR86_RS21005 0.60 +0.5
174,183 - ABZR86_RS21005 0.60 -0.2
174,200 + ABZR86_RS21005 0.62 +0.2
174,200 + ABZR86_RS21005 0.62 -0.1
174,200 + ABZR86_RS21005 0.62 -0.0
174,200 + ABZR86_RS21005 0.62 -0.2
174,201 - ABZR86_RS21005 0.62 +0.1
174,201 - ABZR86_RS21005 0.62 -0.2
174,201 - ABZR86_RS21005 0.62 -0.4
174,204 + ABZR86_RS21005 0.62 +0.2
174,205 - ABZR86_RS21005 0.63 -0.1
174,205 - ABZR86_RS21005 0.63 -0.6
174,228 + ABZR86_RS21005 0.65 -0.1
174,250 - ABZR86_RS21005 0.67 +0.3
174,273 + ABZR86_RS21005 0.69 +0.1
174,273 + ABZR86_RS21005 0.69 +0.2
174,273 + ABZR86_RS21005 0.69 -0.9
174,274 - ABZR86_RS21005 0.69 +0.3
174,274 - ABZR86_RS21005 0.69 +0.0
174,274 - ABZR86_RS21005 0.69 -1.4

Or see this region's nucleotide sequence