Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18785

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18775 and ABZR86_RS18780 overlap by 4 nucleotidesABZR86_RS18780 and ABZR86_RS18785 are separated by 66 nucleotidesABZR86_RS18785 and ABZR86_RS18790 are separated by 251 nucleotides ABZR86_RS18775: ABZR86_RS18775 - nucleotidyltransferase family protein, at 183,452 to 184,150 _RS18775 ABZR86_RS18780: ABZR86_RS18780 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 184,147 to 184,776 _RS18780 ABZR86_RS18785: ABZR86_RS18785 - class I SAM-dependent methyltransferase, at 184,843 to 185,676 _RS18785 ABZR86_RS18790: ABZR86_RS18790 - hypothetical protein, at 185,928 to 187,997 _RS18790 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 183.894 kb on + strand, within ABZR86_RS18775at 183.894 kb on + strand, within ABZR86_RS18775at 183.894 kb on + strand, within ABZR86_RS18775at 184.118 kb on + strandat 184.474 kb on + strand, within ABZR86_RS18780at 184.474 kb on + strand, within ABZR86_RS18780at 184.475 kb on - strand, within ABZR86_RS18780at 184.477 kb on + strand, within ABZR86_RS18780at 184.663 kb on + strand, within ABZR86_RS18780at 184.850 kb on + strandat 184.850 kb on + strandat 184.850 kb on + strandat 184.850 kb on + strandat 184.851 kb on - strandat 184.851 kb on - strandat 184.851 kb on - strandat 184.965 kb on - strand, within ABZR86_RS18785at 185.128 kb on + strand, within ABZR86_RS18785at 185.128 kb on + strand, within ABZR86_RS18785at 185.128 kb on + strand, within ABZR86_RS18785at 185.128 kb on + strand, within ABZR86_RS18785at 185.128 kb on + strand, within ABZR86_RS18785at 185.128 kb on + strand, within ABZR86_RS18785at 185.128 kb on + strand, within ABZR86_RS18785at 185.128 kb on + strand, within ABZR86_RS18785at 185.129 kb on - strand, within ABZR86_RS18785at 185.129 kb on - strand, within ABZR86_RS18785at 185.129 kb on - strand, within ABZR86_RS18785at 185.129 kb on - strand, within ABZR86_RS18785at 185.155 kb on + strand, within ABZR86_RS18785at 185.156 kb on - strand, within ABZR86_RS18785at 185.192 kb on - strand, within ABZR86_RS18785at 185.354 kb on + strand, within ABZR86_RS18785at 185.355 kb on - strand, within ABZR86_RS18785at 185.469 kb on + strand, within ABZR86_RS18785at 185.470 kb on - strand, within ABZR86_RS18785at 185.510 kb on - strand, within ABZR86_RS18785at 185.548 kb on + strand, within ABZR86_RS18785at 185.548 kb on + strand, within ABZR86_RS18785at 185.549 kb on - strand, within ABZR86_RS18785at 185.549 kb on - strand, within ABZR86_RS18785at 185.549 kb on - strand, within ABZR86_RS18785at 185.549 kb on - strand, within ABZR86_RS18785at 185.645 kb on - strandat 185.645 kb on - strandat 185.674 kb on + strandat 185.675 kb on - strandat 185.729 kb on + strandat 185.729 kb on + strandat 185.730 kb on - strandat 185.730 kb on - strandat 185.812 kb on + strandat 185.812 kb on + strandat 185.812 kb on + strandat 185.812 kb on + strandat 185.812 kb on + strandat 185.813 kb on - strandat 185.813 kb on - strandat 185.813 kb on - strandat 185.814 kb on + strandat 185.814 kb on + strandat 185.815 kb on - strandat 185.815 kb on - strandat 185.829 kb on + strandat 185.830 kb on - strandat 185.984 kb on + strandat 186.208 kb on + strand, within ABZR86_RS18790at 186.209 kb on - strand, within ABZR86_RS18790at 186.289 kb on + strand, within ABZR86_RS18790at 186.309 kb on + strand, within ABZR86_RS18790at 186.309 kb on + strand, within ABZR86_RS18790at 186.310 kb on - strand, within ABZR86_RS18790at 186.310 kb on - strand, within ABZR86_RS18790at 186.310 kb on - strand, within ABZR86_RS18790at 186.321 kb on + strand, within ABZR86_RS18790at 186.322 kb on - strand, within ABZR86_RS18790at 186.322 kb on - strand, within ABZR86_RS18790at 186.379 kb on + strand, within ABZR86_RS18790at 186.496 kb on - strand, within ABZR86_RS18790at 186.552 kb on + strand, within ABZR86_RS18790at 186.552 kb on + strand, within ABZR86_RS18790at 186.552 kb on + strand, within ABZR86_RS18790at 186.552 kb on + strand, within ABZR86_RS18790at 186.552 kb on + strand, within ABZR86_RS18790at 186.552 kb on + strand, within ABZR86_RS18790at 186.552 kb on + strand, within ABZR86_RS18790at 186.553 kb on - strand, within ABZR86_RS18790at 186.553 kb on - strand, within ABZR86_RS18790at 186.553 kb on - strand, within ABZR86_RS18790at 186.553 kb on - strand, within ABZR86_RS18790at 186.618 kb on + strand, within ABZR86_RS18790at 186.618 kb on + strand, within ABZR86_RS18790at 186.618 kb on + strand, within ABZR86_RS18790at 186.618 kb on + strand, within ABZR86_RS18790at 186.619 kb on - strand, within ABZR86_RS18790at 186.619 kb on - strand, within ABZR86_RS18790at 186.619 kb on - strand, within ABZR86_RS18790

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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183,894 + ABZR86_RS18775 0.63 +0.5
183,894 + ABZR86_RS18775 0.63 -1.3
183,894 + ABZR86_RS18775 0.63 -0.9
184,118 + -2.1
184,474 + ABZR86_RS18780 0.52 -1.6
184,474 + ABZR86_RS18780 0.52 -1.3
184,475 - ABZR86_RS18780 0.52 -2.7
184,477 + ABZR86_RS18780 0.52 -1.1
184,663 + ABZR86_RS18780 0.82 +0.4
184,850 + -0.9
184,850 + -0.2
184,850 + -0.4
184,850 + -0.5
184,851 - +0.0
184,851 - +0.4
184,851 - -0.3
184,965 - ABZR86_RS18785 0.15 +0.1
185,128 + ABZR86_RS18785 0.34 +0.2
185,128 + ABZR86_RS18785 0.34 -0.3
185,128 + ABZR86_RS18785 0.34 -1.6
185,128 + ABZR86_RS18785 0.34 -2.0
185,128 + ABZR86_RS18785 0.34 -0.3
185,128 + ABZR86_RS18785 0.34 +0.0
185,128 + ABZR86_RS18785 0.34 +0.6
185,128 + ABZR86_RS18785 0.34 -0.2
185,129 - ABZR86_RS18785 0.34 -0.6
185,129 - ABZR86_RS18785 0.34 +0.3
185,129 - ABZR86_RS18785 0.34 -0.4
185,129 - ABZR86_RS18785 0.34 -0.2
185,155 + ABZR86_RS18785 0.37 +0.9
185,156 - ABZR86_RS18785 0.38 -0.2
185,192 - ABZR86_RS18785 0.42 -0.3
185,354 + ABZR86_RS18785 0.61 -1.5
185,355 - ABZR86_RS18785 0.61 -0.8
185,469 + ABZR86_RS18785 0.75 -0.8
185,470 - ABZR86_RS18785 0.75 -0.3
185,510 - ABZR86_RS18785 0.80 -2.4
185,548 + ABZR86_RS18785 0.85 +0.7
185,548 + ABZR86_RS18785 0.85 -0.6
185,549 - ABZR86_RS18785 0.85 -0.9
185,549 - ABZR86_RS18785 0.85 +0.0
185,549 - ABZR86_RS18785 0.85 -0.1
185,549 - ABZR86_RS18785 0.85 -0.3
185,645 - +0.1
185,645 - -0.4
185,674 + -0.6
185,675 - +1.3
185,729 + -0.0
185,729 + +0.0
185,730 - +0.4
185,730 - +0.2
185,812 + -0.0
185,812 + -0.4
185,812 + -0.2
185,812 + +0.2
185,812 + +0.8
185,813 - -0.4
185,813 - +1.9
185,813 - +0.8
185,814 + -0.0
185,814 + +0.4
185,815 - +0.1
185,815 - -0.0
185,829 + +0.6
185,830 - +0.6
185,984 + +0.1
186,208 + ABZR86_RS18790 0.14 -0.8
186,209 - ABZR86_RS18790 0.14 -0.1
186,289 + ABZR86_RS18790 0.17 -0.3
186,309 + ABZR86_RS18790 0.18 +0.1
186,309 + ABZR86_RS18790 0.18 +0.1
186,310 - ABZR86_RS18790 0.18 -0.1
186,310 - ABZR86_RS18790 0.18 +0.4
186,310 - ABZR86_RS18790 0.18 -0.0
186,321 + ABZR86_RS18790 0.19 +0.4
186,322 - ABZR86_RS18790 0.19 +0.5
186,322 - ABZR86_RS18790 0.19 +0.3
186,379 + ABZR86_RS18790 0.22 -0.1
186,496 - ABZR86_RS18790 0.27 +0.1
186,552 + ABZR86_RS18790 0.30 +0.4
186,552 + ABZR86_RS18790 0.30 -0.1
186,552 + ABZR86_RS18790 0.30 -0.6
186,552 + ABZR86_RS18790 0.30 +0.3
186,552 + ABZR86_RS18790 0.30 +0.6
186,552 + ABZR86_RS18790 0.30 +0.3
186,552 + ABZR86_RS18790 0.30 -0.5
186,553 - ABZR86_RS18790 0.30 -0.1
186,553 - ABZR86_RS18790 0.30 -0.2
186,553 - ABZR86_RS18790 0.30 -0.5
186,553 - ABZR86_RS18790 0.30 -0.2
186,618 + ABZR86_RS18790 0.33 +0.1
186,618 + ABZR86_RS18790 0.33 +0.7
186,618 + ABZR86_RS18790 0.33 -0.0
186,618 + ABZR86_RS18790 0.33 -0.3
186,619 - ABZR86_RS18790 0.33 +1.1
186,619 - ABZR86_RS18790 0.33 +1.6
186,619 - ABZR86_RS18790 0.33 +0.2

Or see this region's nucleotide sequence