Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18720 and ABZR86_RS18725 overlap by 4 nucleotides ABZR86_RS18725 and ABZR86_RS18730 overlap by 4 nucleotides ABZR86_RS18730 and ABZR86_RS18735 overlap by 4 nucleotides
ABZR86_RS18720: ABZR86_RS18720 - dTDP-4-dehydrorhamnose reductase, at 170,339 to 171,283
_RS18720
ABZR86_RS18725: ABZR86_RS18725 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 171,280 to 171,837
_RS18725
ABZR86_RS18730: ABZR86_RS18730 - glucose-1-phosphate thymidylyltransferase RfbA, at 171,834 to 172,721
_RS18730
ABZR86_RS18735: ABZR86_RS18735 - dTDP-glucose 4,6-dehydratase, at 172,718 to 173,788
_RS18735
Position (kb) 171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 170.943 kb on + strand, within ABZR86_RS18720 at 170.943 kb on + strand, within ABZR86_RS18720 at 170.955 kb on + strand, within ABZR86_RS18720 at 171.069 kb on + strand, within ABZR86_RS18720 at 171.450 kb on - strand, within ABZR86_RS18725 at 171.450 kb on - strand, within ABZR86_RS18725 at 171.450 kb on - strand, within ABZR86_RS18725 at 171.465 kb on - strand, within ABZR86_RS18725 at 171.654 kb on - strand, within ABZR86_RS18725 at 171.749 kb on + strand, within ABZR86_RS18725 at 171.749 kb on + strand, within ABZR86_RS18725 at 171.750 kb on - strand, within ABZR86_RS18725 at 171.750 kb on - strand, within ABZR86_RS18725 at 171.871 kb on + strand at 171.872 kb on - strand at 171.872 kb on - strand at 172.006 kb on + strand, within ABZR86_RS18730 at 172.007 kb on - strand, within ABZR86_RS18730 at 172.192 kb on + strand, within ABZR86_RS18730 at 172.378 kb on + strand, within ABZR86_RS18730 at 172.378 kb on + strand, within ABZR86_RS18730 at 172.379 kb on - strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.610 kb on - strand, within ABZR86_RS18730 at 172.610 kb on - strand, within ABZR86_RS18730 at 172.610 kb on - strand, within ABZR86_RS18730 at 172.670 kb on - strand at 172.670 kb on - strand at 172.709 kb on + strand at 172.709 kb on + strand at 172.709 kb on + strand at 172.709 kb on + strand at 172.710 kb on - strand at 172.710 kb on - strand at 172.710 kb on - strand at 172.738 kb on + strand at 172.738 kb on + strand at 172.743 kb on + strand at 172.744 kb on - strand at 172.744 kb on - strand at 172.744 kb on - strand at 172.879 kb on - strand, within ABZR86_RS18735 at 173.027 kb on - strand, within ABZR86_RS18735 at 173.027 kb on - strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.029 kb on - strand, within ABZR86_RS18735 at 173.029 kb on - strand, within ABZR86_RS18735 at 173.202 kb on + strand, within ABZR86_RS18735 at 173.202 kb on + strand, within ABZR86_RS18735 at 173.203 kb on - strand, within ABZR86_RS18735 at 173.241 kb on + strand, within ABZR86_RS18735 at 173.241 kb on + strand, within ABZR86_RS18735 at 173.359 kb on - strand, within ABZR86_RS18735 at 173.359 kb on - strand, within ABZR86_RS18735 at 173.359 kb on - strand, within ABZR86_RS18735 at 173.359 kb on - strand, within ABZR86_RS18735 at 173.609 kb on + strand, within ABZR86_RS18735 at 173.609 kb on + strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 170,943 + ABZR86_RS18720 0.64 -0.5 170,943 + ABZR86_RS18720 0.64 -1.8 170,955 + ABZR86_RS18720 0.65 -1.6 171,069 + ABZR86_RS18720 0.77 -1.3 171,450 - ABZR86_RS18725 0.30 +0.2 171,450 - ABZR86_RS18725 0.30 -0.5 171,450 - ABZR86_RS18725 0.30 -1.0 171,465 - ABZR86_RS18725 0.33 -0.3 171,654 - ABZR86_RS18725 0.67 -0.9 171,749 + ABZR86_RS18725 0.84 -1.2 171,749 + ABZR86_RS18725 0.84 -2.0 171,750 - ABZR86_RS18725 0.84 -1.0 171,750 - ABZR86_RS18725 0.84 -1.9 171,871 + -1.0 171,872 - -0.4 171,872 - +0.2 172,006 + ABZR86_RS18730 0.19 -2.2 172,007 - ABZR86_RS18730 0.19 -0.8 172,192 + ABZR86_RS18730 0.40 -2.0 172,378 + ABZR86_RS18730 0.61 -2.3 172,378 + ABZR86_RS18730 0.61 -3.2 172,379 - ABZR86_RS18730 0.61 -0.8 172,609 + ABZR86_RS18730 0.87 -0.9 172,609 + ABZR86_RS18730 0.87 -0.7 172,609 + ABZR86_RS18730 0.87 -1.7 172,609 + ABZR86_RS18730 0.87 -1.4 172,609 + ABZR86_RS18730 0.87 -2.4 172,610 - ABZR86_RS18730 0.87 -2.4 172,610 - ABZR86_RS18730 0.87 -0.5 172,610 - ABZR86_RS18730 0.87 -0.3 172,670 - -0.9 172,670 - -1.3 172,709 + +0.1 172,709 + -0.9 172,709 + -0.9 172,709 + +2.1 172,710 - +0.9 172,710 - -1.4 172,710 - -0.0 172,738 + +0.2 172,738 + +0.3 172,743 + +0.0 172,744 - -0.5 172,744 - -0.3 172,744 - -0.1 172,879 - ABZR86_RS18735 0.15 -1.3 173,027 - ABZR86_RS18735 0.29 -0.8 173,027 - ABZR86_RS18735 0.29 -1.8 173,028 + ABZR86_RS18735 0.29 -1.0 173,028 + ABZR86_RS18735 0.29 -0.8 173,028 + ABZR86_RS18735 0.29 +0.5 173,028 + ABZR86_RS18735 0.29 -0.4 173,028 + ABZR86_RS18735 0.29 +0.0 173,028 + ABZR86_RS18735 0.29 -1.4 173,029 - ABZR86_RS18735 0.29 +0.1 173,029 - ABZR86_RS18735 0.29 -0.8 173,202 + ABZR86_RS18735 0.45 -1.3 173,202 + ABZR86_RS18735 0.45 -1.7 173,203 - ABZR86_RS18735 0.45 -0.7 173,241 + ABZR86_RS18735 0.49 -1.1 173,241 + ABZR86_RS18735 0.49 -1.7 173,359 - ABZR86_RS18735 0.60 -0.1 173,359 - ABZR86_RS18735 0.60 -0.5 173,359 - ABZR86_RS18735 0.60 -2.3 173,359 - ABZR86_RS18735 0.60 -1.7 173,609 + ABZR86_RS18735 0.83 -0.7 173,609 + ABZR86_RS18735 0.83 -0.6 173,610 - ABZR86_RS18735 0.83 +0.7 173,610 - ABZR86_RS18735 0.83 -1.2 173,610 - ABZR86_RS18735 0.83 -0.3 173,610 - ABZR86_RS18735 0.83 -0.4 173,610 - ABZR86_RS18735 0.83 +0.2
Or see this region's nucleotide sequence