Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16395

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16390 and ABZR86_RS16395 are separated by 83 nucleotidesABZR86_RS16395 and ABZR86_RS16400 are separated by 91 nucleotidesABZR86_RS16400 and ABZR86_RS16405 are separated by 6 nucleotides ABZR86_RS16390: ABZR86_RS16390 - DUF2867 domain-containing protein, at 3,703,315 to 3,704,718 _RS16390 ABZR86_RS16395: ABZR86_RS16395 - metalloregulator ArsR/SmtB family transcription factor, at 3,704,802 to 3,705,116 _RS16395 ABZR86_RS16400: ABZR86_RS16400 - pseudouridine synthase, at 3,705,208 to 3,705,927 _RS16400 ABZR86_RS16405: ABZR86_RS16405 - ABC transporter permease, at 3,705,934 to 3,706,710 _RS16405 Position (kb) 3704 3705 3706Strain fitness (log2 ratio) -2 -1 0 1 2at 3704.319 kb on - strand, within ABZR86_RS16390at 3704.319 kb on - strand, within ABZR86_RS16390at 3704.319 kb on - strand, within ABZR86_RS16390at 3704.319 kb on - strand, within ABZR86_RS16390at 3704.481 kb on - strand, within ABZR86_RS16390at 3704.481 kb on - strand, within ABZR86_RS16390at 3704.481 kb on - strand, within ABZR86_RS16390at 3704.553 kb on + strand, within ABZR86_RS16390at 3704.757 kb on + strandat 3704.888 kb on + strand, within ABZR86_RS16395at 3704.888 kb on + strand, within ABZR86_RS16395at 3704.888 kb on + strand, within ABZR86_RS16395at 3704.889 kb on - strand, within ABZR86_RS16395at 3704.889 kb on - strand, within ABZR86_RS16395at 3704.926 kb on + strand, within ABZR86_RS16395at 3704.926 kb on + strand, within ABZR86_RS16395at 3704.927 kb on - strand, within ABZR86_RS16395at 3704.927 kb on - strand, within ABZR86_RS16395at 3704.927 kb on - strand, within ABZR86_RS16395at 3705.055 kb on + strand, within ABZR86_RS16395at 3705.055 kb on + strand, within ABZR86_RS16395at 3705.055 kb on + strand, within ABZR86_RS16395at 3705.055 kb on + strand, within ABZR86_RS16395at 3705.056 kb on - strand, within ABZR86_RS16395at 3705.150 kb on + strandat 3705.457 kb on + strand, within ABZR86_RS16400at 3705.458 kb on - strand, within ABZR86_RS16400at 3705.518 kb on + strand, within ABZR86_RS16400at 3705.518 kb on + strand, within ABZR86_RS16400at 3705.519 kb on - strand, within ABZR86_RS16400at 3705.722 kb on + strand, within ABZR86_RS16400at 3705.722 kb on + strand, within ABZR86_RS16400at 3705.722 kb on + strand, within ABZR86_RS16400at 3705.722 kb on + strand, within ABZR86_RS16400at 3705.722 kb on + strand, within ABZR86_RS16400at 3705.722 kb on + strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.723 kb on - strand, within ABZR86_RS16400at 3705.911 kb on + strandat 3705.911 kb on + strandat 3705.912 kb on - strandat 3705.912 kb on - strandat 3705.936 kb on - strandat 3706.079 kb on + strand, within ABZR86_RS16405at 3706.079 kb on + strand, within ABZR86_RS16405at 3706.080 kb on - strand, within ABZR86_RS16405at 3706.080 kb on - strand, within ABZR86_RS16405

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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3,704,319 - ABZR86_RS16390 0.72 -0.1
3,704,319 - ABZR86_RS16390 0.72 +0.4
3,704,319 - ABZR86_RS16390 0.72 +1.1
3,704,319 - ABZR86_RS16390 0.72 +0.2
3,704,481 - ABZR86_RS16390 0.83 -0.4
3,704,481 - ABZR86_RS16390 0.83 +1.3
3,704,481 - ABZR86_RS16390 0.83 -0.3
3,704,553 + ABZR86_RS16390 0.88 -0.0
3,704,757 + +0.1
3,704,888 + ABZR86_RS16395 0.27 +0.2
3,704,888 + ABZR86_RS16395 0.27 -0.2
3,704,888 + ABZR86_RS16395 0.27 -0.0
3,704,889 - ABZR86_RS16395 0.28 -0.2
3,704,889 - ABZR86_RS16395 0.28 +0.8
3,704,926 + ABZR86_RS16395 0.39 +0.0
3,704,926 + ABZR86_RS16395 0.39 -0.1
3,704,927 - ABZR86_RS16395 0.40 -0.8
3,704,927 - ABZR86_RS16395 0.40 +0.5
3,704,927 - ABZR86_RS16395 0.40 -0.0
3,705,055 + ABZR86_RS16395 0.80 +0.2
3,705,055 + ABZR86_RS16395 0.80 -0.4
3,705,055 + ABZR86_RS16395 0.80 +0.8
3,705,055 + ABZR86_RS16395 0.80 +2.5
3,705,056 - ABZR86_RS16395 0.81 +0.3
3,705,150 + -0.5
3,705,457 + ABZR86_RS16400 0.35 +0.4
3,705,458 - ABZR86_RS16400 0.35 -0.4
3,705,518 + ABZR86_RS16400 0.43 -0.6
3,705,518 + ABZR86_RS16400 0.43 -0.2
3,705,519 - ABZR86_RS16400 0.43 -0.5
3,705,722 + ABZR86_RS16400 0.71 +0.4
3,705,722 + ABZR86_RS16400 0.71 -0.3
3,705,722 + ABZR86_RS16400 0.71 +0.1
3,705,722 + ABZR86_RS16400 0.71 -0.0
3,705,722 + ABZR86_RS16400 0.71 -0.4
3,705,722 + ABZR86_RS16400 0.71 -0.5
3,705,723 - ABZR86_RS16400 0.72 -0.1
3,705,723 - ABZR86_RS16400 0.72 -0.1
3,705,723 - ABZR86_RS16400 0.72 +0.3
3,705,723 - ABZR86_RS16400 0.72 -0.4
3,705,723 - ABZR86_RS16400 0.72 -0.4
3,705,723 - ABZR86_RS16400 0.72 +1.3
3,705,723 - ABZR86_RS16400 0.72 -0.3
3,705,723 - ABZR86_RS16400 0.72 -0.0
3,705,723 - ABZR86_RS16400 0.72 +0.4
3,705,723 - ABZR86_RS16400 0.72 -0.2
3,705,911 + -0.7
3,705,911 + -0.3
3,705,912 - +0.3
3,705,912 - +0.2
3,705,936 - -0.2
3,706,079 + ABZR86_RS16405 0.19 -2.3
3,706,079 + ABZR86_RS16405 0.19 +0.1
3,706,080 - ABZR86_RS16405 0.19 -2.2
3,706,080 - ABZR86_RS16405 0.19 -1.2

Or see this region's nucleotide sequence