Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS16175 and ABZR86_RS16180 are separated by 477 nucleotides ABZR86_RS16180 and ABZR86_RS16185 overlap by 1 nucleotides
ABZR86_RS16175: ABZR86_RS16175 - hypothetical protein, at 3,653,885 to 3,654,145
_RS16175
ABZR86_RS16180: ABZR86_RS16180 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 3,654,623 to 3,655,900
_RS16180
ABZR86_RS16185: ABZR86_RS16185 - NAD-dependent epimerase, at 3,655,900 to 3,656,910
_RS16185
Position (kb)
3654
3655
3656 Strain fitness (log2 ratio)
-1
0
1 at 3653.648 kb on + strand at 3653.794 kb on + strand at 3653.794 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.846 kb on - strand at 3653.846 kb on - strand at 3654.233 kb on + strand at 3654.233 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.320 kb on + strand at 3654.376 kb on + strand at 3654.377 kb on - strand at 3654.377 kb on - strand at 3654.401 kb on + strand at 3654.474 kb on + strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.570 kb on + strand at 3654.570 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.621 kb on - strand at 3654.621 kb on - strand at 3654.669 kb on - strand at 3654.669 kb on - strand at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3655.328 kb on - strand, within ABZR86_RS16180 at 3655.328 kb on - strand, within ABZR86_RS16180 at 3655.425 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.827 kb on - strand at 3655.827 kb on - strand at 3655.851 kb on - strand at 3655.862 kb on + strand at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.124 kb on + strand, within ABZR86_RS16185 at 3656.124 kb on + strand, within ABZR86_RS16185 at 3656.354 kb on - strand, within ABZR86_RS16185 at 3656.395 kb on + strand, within ABZR86_RS16185 at 3656.718 kb on + strand, within ABZR86_RS16185 at 3656.865 kb on + strand at 3656.866 kb on - strand at 3656.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 3,653,648 + -0.0 3,653,794 + +0.1 3,653,794 + -0.4 3,653,845 + +0.1 3,653,845 + -0.2 3,653,845 + +0.9 3,653,845 + +0.5 3,653,845 + +0.4 3,653,845 + -0.5 3,653,845 + -0.0 3,653,845 + +0.1 3,653,845 + +0.5 3,653,845 + -0.4 3,653,846 - +0.1 3,653,846 - -0.5 3,654,233 + -0.7 3,654,233 + -0.1 3,654,258 + +0.6 3,654,258 + +0.4 3,654,258 + +0.1 3,654,258 + -1.5 3,654,259 - +0.2 3,654,259 - -0.0 3,654,259 - -0.0 3,654,259 - +0.7 3,654,259 - +0.7 3,654,260 + +0.1 3,654,260 + -0.9 3,654,260 + -0.1 3,654,260 + +0.7 3,654,260 + -0.1 3,654,260 + -0.4 3,654,261 - +0.5 3,654,261 - +0.0 3,654,261 - +0.1 3,654,261 - +0.6 3,654,320 + -0.4 3,654,376 + -0.5 3,654,377 - -0.2 3,654,377 - +0.4 3,654,401 + -0.3 3,654,474 + +0.3 3,654,475 - +0.2 3,654,475 - -0.0 3,654,475 - +0.2 3,654,475 - +0.2 3,654,570 + -0.9 3,654,570 + -0.9 3,654,620 + -0.4 3,654,620 + -0.4 3,654,620 + -0.2 3,654,620 + +0.7 3,654,620 + +0.8 3,654,620 + +0.3 3,654,620 + -0.6 3,654,621 - -0.5 3,654,621 - +0.3 3,654,669 - +0.6 3,654,669 - -0.0 3,654,974 + ABZR86_RS16180 0.27 +0.0 3,654,974 + ABZR86_RS16180 0.27 +0.8 3,654,974 + ABZR86_RS16180 0.27 +0.6 3,654,974 + ABZR86_RS16180 0.27 +0.5 3,654,974 + ABZR86_RS16180 0.27 -0.4 3,655,328 - ABZR86_RS16180 0.55 -0.1 3,655,328 - ABZR86_RS16180 0.55 +0.9 3,655,425 - ABZR86_RS16180 0.63 +0.5 3,655,758 - ABZR86_RS16180 0.89 +0.0 3,655,758 - ABZR86_RS16180 0.89 -0.3 3,655,758 - ABZR86_RS16180 0.89 -0.3 3,655,827 - +0.2 3,655,827 - -0.6 3,655,851 - +0.5 3,655,862 + +1.0 3,656,065 - ABZR86_RS16185 0.16 +0.6 3,656,065 - ABZR86_RS16185 0.16 -0.1 3,656,065 - ABZR86_RS16185 0.16 -0.1 3,656,065 - ABZR86_RS16185 0.16 +0.4 3,656,065 - ABZR86_RS16185 0.16 -0.0 3,656,065 - ABZR86_RS16185 0.16 +0.4 3,656,065 - ABZR86_RS16185 0.16 -0.3 3,656,124 + ABZR86_RS16185 0.22 +0.4 3,656,124 + ABZR86_RS16185 0.22 -0.2 3,656,354 - ABZR86_RS16185 0.45 +0.0 3,656,395 + ABZR86_RS16185 0.49 +0.2 3,656,718 + ABZR86_RS16185 0.81 +0.4 3,656,865 + +0.2 3,656,866 - -0.6 3,656,897 - -0.5
Or see this region's nucleotide sequence