Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS12905

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS12900 and ABZR86_RS12905 overlap by 1 nucleotidesABZR86_RS12905 and ABZR86_RS12910 overlap by 4 nucleotidesABZR86_RS12910 and ABZR86_RS12915 are separated by 59 nucleotides ABZR86_RS12900: ABZR86_RS12900 - heme A synthase, at 2,891,521 to 2,892,696 _RS12900 ABZR86_RS12905: ABZR86_RS12905 - hypothetical protein, at 2,892,696 to 2,893,295 _RS12905 ABZR86_RS12910: ABZR86_RS12910 - SURF1 family protein, at 2,893,292 to 2,894,035 _RS12910 ABZR86_RS12915: ABZR86_RS12915 - twin transmembrane helix small protein, at 2,894,095 to 2,894,310 _RS12915 Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -2 -1 0 1at 2891.774 kb on + strand, within ABZR86_RS12900at 2891.775 kb on - strand, within ABZR86_RS12900at 2891.856 kb on - strand, within ABZR86_RS12900at 2891.856 kb on - strand, within ABZR86_RS12900at 2891.856 kb on - strand, within ABZR86_RS12900at 2891.963 kb on + strand, within ABZR86_RS12900at 2892.047 kb on + strand, within ABZR86_RS12900at 2892.047 kb on + strand, within ABZR86_RS12900at 2892.047 kb on + strand, within ABZR86_RS12900at 2892.047 kb on + strand, within ABZR86_RS12900at 2892.048 kb on - strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.326 kb on + strand, within ABZR86_RS12900at 2892.327 kb on - strand, within ABZR86_RS12900at 2892.327 kb on - strand, within ABZR86_RS12900at 2892.327 kb on - strand, within ABZR86_RS12900at 2892.327 kb on - strand, within ABZR86_RS12900at 2892.327 kb on - strand, within ABZR86_RS12900at 2892.374 kb on + strand, within ABZR86_RS12900at 2892.375 kb on - strand, within ABZR86_RS12900at 2892.561 kb on - strand, within ABZR86_RS12900at 2892.754 kb on + strandat 2892.995 kb on + strand, within ABZR86_RS12905at 2892.995 kb on + strand, within ABZR86_RS12905at 2892.996 kb on - strand, within ABZR86_RS12905at 2892.996 kb on - strand, within ABZR86_RS12905at 2892.996 kb on - strand, within ABZR86_RS12905at 2893.386 kb on + strand, within ABZR86_RS12910at 2893.386 kb on + strand, within ABZR86_RS12910at 2893.387 kb on - strand, within ABZR86_RS12910at 2893.387 kb on - strand, within ABZR86_RS12910at 2893.443 kb on + strand, within ABZR86_RS12910at 2893.443 kb on + strand, within ABZR86_RS12910at 2893.444 kb on - strand, within ABZR86_RS12910at 2893.444 kb on - strand, within ABZR86_RS12910at 2893.444 kb on - strand, within ABZR86_RS12910at 2893.486 kb on - strand, within ABZR86_RS12910at 2893.486 kb on - strand, within ABZR86_RS12910at 2893.530 kb on + strand, within ABZR86_RS12910at 2893.530 kb on + strand, within ABZR86_RS12910at 2893.530 kb on + strand, within ABZR86_RS12910at 2893.530 kb on + strand, within ABZR86_RS12910at 2893.530 kb on + strand, within ABZR86_RS12910at 2893.531 kb on - strand, within ABZR86_RS12910at 2893.531 kb on - strand, within ABZR86_RS12910at 2893.531 kb on - strand, within ABZR86_RS12910at 2893.611 kb on + strand, within ABZR86_RS12910at 2893.611 kb on + strand, within ABZR86_RS12910at 2893.611 kb on + strand, within ABZR86_RS12910at 2893.612 kb on - strand, within ABZR86_RS12910at 2893.612 kb on - strand, within ABZR86_RS12910at 2893.612 kb on - strand, within ABZR86_RS12910at 2893.612 kb on - strand, within ABZR86_RS12910at 2893.612 kb on - strand, within ABZR86_RS12910at 2893.612 kb on - strand, within ABZR86_RS12910at 2893.612 kb on - strand, within ABZR86_RS12910at 2893.743 kb on + strand, within ABZR86_RS12910at 2893.743 kb on + strand, within ABZR86_RS12910at 2893.743 kb on + strand, within ABZR86_RS12910at 2893.744 kb on - strand, within ABZR86_RS12910at 2893.791 kb on + strand, within ABZR86_RS12910at 2893.791 kb on + strand, within ABZR86_RS12910at 2893.809 kb on + strand, within ABZR86_RS12910at 2893.810 kb on - strand, within ABZR86_RS12910at 2893.810 kb on - strand, within ABZR86_RS12910at 2894.035 kb on + strandat 2894.036 kb on - strandat 2894.036 kb on - strandat 2894.036 kb on - strandat 2894.059 kb on + strandat 2894.060 kb on - strandat 2894.060 kb on - strandat 2894.060 kb on - strandat 2894.060 kb on - strandat 2894.061 kb on + strandat 2894.061 kb on + strandat 2894.113 kb on + strandat 2894.113 kb on + strandat 2894.113 kb on + strandat 2894.113 kb on + strandat 2894.113 kb on + strandat 2894.114 kb on - strandat 2894.114 kb on - strandat 2894.114 kb on - strandat 2894.114 kb on - strandat 2894.114 kb on - strandat 2894.167 kb on + strand, within ABZR86_RS12915at 2894.167 kb on + strand, within ABZR86_RS12915at 2894.167 kb on + strand, within ABZR86_RS12915at 2894.168 kb on - strand, within ABZR86_RS12915

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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2,891,774 + ABZR86_RS12900 0.22 -0.2
2,891,775 - ABZR86_RS12900 0.22 -0.5
2,891,856 - ABZR86_RS12900 0.28 -0.1
2,891,856 - ABZR86_RS12900 0.28 -1.2
2,891,856 - ABZR86_RS12900 0.28 -0.5
2,891,963 + ABZR86_RS12900 0.38 -0.1
2,892,047 + ABZR86_RS12900 0.45 -0.5
2,892,047 + ABZR86_RS12900 0.45 -1.1
2,892,047 + ABZR86_RS12900 0.45 -0.6
2,892,047 + ABZR86_RS12900 0.45 -0.8
2,892,048 - ABZR86_RS12900 0.45 +1.0
2,892,326 + ABZR86_RS12900 0.68 -0.8
2,892,326 + ABZR86_RS12900 0.68 +0.7
2,892,326 + ABZR86_RS12900 0.68 -0.9
2,892,326 + ABZR86_RS12900 0.68 -1.0
2,892,326 + ABZR86_RS12900 0.68 -0.3
2,892,326 + ABZR86_RS12900 0.68 +0.1
2,892,326 + ABZR86_RS12900 0.68 -0.7
2,892,326 + ABZR86_RS12900 0.68 +0.3
2,892,326 + ABZR86_RS12900 0.68 +0.6
2,892,326 + ABZR86_RS12900 0.68 +0.5
2,892,327 - ABZR86_RS12900 0.69 -0.5
2,892,327 - ABZR86_RS12900 0.69 -0.6
2,892,327 - ABZR86_RS12900 0.69 -0.2
2,892,327 - ABZR86_RS12900 0.69 -0.6
2,892,327 - ABZR86_RS12900 0.69 -1.4
2,892,374 + ABZR86_RS12900 0.73 +1.4
2,892,375 - ABZR86_RS12900 0.73 -0.3
2,892,561 - ABZR86_RS12900 0.88 -1.1
2,892,754 + -0.4
2,892,995 + ABZR86_RS12905 0.50 -1.1
2,892,995 + ABZR86_RS12905 0.50 +0.3
2,892,996 - ABZR86_RS12905 0.50 -2.6
2,892,996 - ABZR86_RS12905 0.50 -0.5
2,892,996 - ABZR86_RS12905 0.50 +0.1
2,893,386 + ABZR86_RS12910 0.13 +0.3
2,893,386 + ABZR86_RS12910 0.13 +0.8
2,893,387 - ABZR86_RS12910 0.13 -0.5
2,893,387 - ABZR86_RS12910 0.13 -1.0
2,893,443 + ABZR86_RS12910 0.20 +0.0
2,893,443 + ABZR86_RS12910 0.20 -0.2
2,893,444 - ABZR86_RS12910 0.20 -1.7
2,893,444 - ABZR86_RS12910 0.20 -1.7
2,893,444 - ABZR86_RS12910 0.20 -0.7
2,893,486 - ABZR86_RS12910 0.26 -0.7
2,893,486 - ABZR86_RS12910 0.26 -0.9
2,893,530 + ABZR86_RS12910 0.32 -0.2
2,893,530 + ABZR86_RS12910 0.32 -0.2
2,893,530 + ABZR86_RS12910 0.32 -0.7
2,893,530 + ABZR86_RS12910 0.32 +1.0
2,893,530 + ABZR86_RS12910 0.32 +0.5
2,893,531 - ABZR86_RS12910 0.32 -2.0
2,893,531 - ABZR86_RS12910 0.32 -1.1
2,893,531 - ABZR86_RS12910 0.32 -2.2
2,893,611 + ABZR86_RS12910 0.43 +0.5
2,893,611 + ABZR86_RS12910 0.43 +0.2
2,893,611 + ABZR86_RS12910 0.43 -1.5
2,893,612 - ABZR86_RS12910 0.43 -0.2
2,893,612 - ABZR86_RS12910 0.43 +0.2
2,893,612 - ABZR86_RS12910 0.43 -0.7
2,893,612 - ABZR86_RS12910 0.43 -0.0
2,893,612 - ABZR86_RS12910 0.43 -1.8
2,893,612 - ABZR86_RS12910 0.43 -1.4
2,893,612 - ABZR86_RS12910 0.43 -0.1
2,893,743 + ABZR86_RS12910 0.61 +0.3
2,893,743 + ABZR86_RS12910 0.61 -1.4
2,893,743 + ABZR86_RS12910 0.61 -0.3
2,893,744 - ABZR86_RS12910 0.61 -1.0
2,893,791 + ABZR86_RS12910 0.67 -0.8
2,893,791 + ABZR86_RS12910 0.67 -0.5
2,893,809 + ABZR86_RS12910 0.69 +0.7
2,893,810 - ABZR86_RS12910 0.70 -0.5
2,893,810 - ABZR86_RS12910 0.70 -0.3
2,894,035 + -0.5
2,894,036 - +0.1
2,894,036 - +0.5
2,894,036 - +0.5
2,894,059 + +0.0
2,894,060 - -1.6
2,894,060 - +0.4
2,894,060 - -0.2
2,894,060 - -0.4
2,894,061 + -0.8
2,894,061 + -0.7
2,894,113 + +0.3
2,894,113 + -0.3
2,894,113 + +0.7
2,894,113 + +0.8
2,894,113 + +0.2
2,894,114 - +0.0
2,894,114 - +0.4
2,894,114 - +0.0
2,894,114 - -0.6
2,894,114 - -0.8
2,894,167 + ABZR86_RS12915 0.33 -0.6
2,894,167 + ABZR86_RS12915 0.33 +1.1
2,894,167 + ABZR86_RS12915 0.33 +0.1
2,894,168 - ABZR86_RS12915 0.34 -0.3

Or see this region's nucleotide sequence