Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06030

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06025 and ABZR86_RS06030 are separated by 126 nucleotidesABZR86_RS06030 and ABZR86_RS06035 are separated by 48 nucleotidesABZR86_RS06035 and ABZR86_RS06040 are separated by 408 nucleotides ABZR86_RS06025: ABZR86_RS06025 - translation initiation factor IF-2, at 1,352,594 to 1,355,401 _RS06025 ABZR86_RS06030: ABZR86_RS06030 - transcription termination factor NusA, at 1,355,528 to 1,357,027 _RS06030 ABZR86_RS06035: ABZR86_RS06035 - ribosome maturation factor RimP, at 1,357,076 to 1,357,588 _RS06035 ABZR86_RS06040: ABZR86_RS06040 - hypothetical protein, at 1,357,997 to 1,358,314 _RS06040 Position (kb) 1355 1356 1357 1358Strain fitness (log2 ratio) -2 -1 0 1 2at 1355.391 kb on - strandat 1355.431 kb on - strandat 1355.431 kb on - strandat 1355.431 kb on - strandat 1355.686 kb on - strand, within ABZR86_RS06030at 1357.078 kb on - strandat 1357.078 kb on - strandat 1357.126 kb on - strandat 1357.126 kb on - strandat 1357.604 kb on - strandat 1357.649 kb on - strandat 1357.716 kb on - strandat 1357.716 kb on - strandat 1357.716 kb on - strandat 1357.716 kb on - strandat 1357.880 kb on - strandat 1357.908 kb on + strandat 1357.908 kb on + strandat 1357.909 kb on - strandat 1358.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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1,355,391 - +0.5
1,355,431 - +1.9
1,355,431 - -0.3
1,355,431 - -0.8
1,355,686 - ABZR86_RS06030 0.11 -1.8
1,357,078 - -0.8
1,357,078 - -0.8
1,357,126 - -0.6
1,357,126 - -1.2
1,357,604 - -2.0
1,357,649 - -1.0
1,357,716 - +0.3
1,357,716 - +0.3
1,357,716 - +0.1
1,357,716 - -2.3
1,357,880 - -0.1
1,357,908 + +0.2
1,357,908 + -1.0
1,357,909 - +0.7
1,358,014 + -0.4

Or see this region's nucleotide sequence