Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05540 and ABZR86_RS05545 overlap by 14 nucleotides ABZR86_RS05545 and ABZR86_RS05550 are separated by 7 nucleotides
ABZR86_RS05540: ABZR86_RS05540 - nucleoside-diphosphate sugar epimerase/dehydratase, at 1,252,637 to 1,254,532
_RS05540
ABZR86_RS05545: ABZR86_RS05545 - glycosyltransferase family 4 protein, at 1,254,519 to 1,255,553
_RS05545
ABZR86_RS05550: ABZR86_RS05550 - lipopolysaccharide assembly protein LapB, at 1,255,561 to 1,256,733
_RS05550
Position (kb)
1254
1255
1256 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1253.565 kb on + strand, within ABZR86_RS05540 at 1253.566 kb on - strand, within ABZR86_RS05540 at 1253.566 kb on - strand, within ABZR86_RS05540 at 1253.566 kb on - strand, within ABZR86_RS05540 at 1253.687 kb on - strand, within ABZR86_RS05540 at 1253.687 kb on - strand, within ABZR86_RS05540 at 1253.821 kb on - strand, within ABZR86_RS05540 at 1254.145 kb on - strand, within ABZR86_RS05540 at 1254.145 kb on - strand, within ABZR86_RS05540 at 1254.189 kb on + strand, within ABZR86_RS05540 at 1254.189 kb on + strand, within ABZR86_RS05540 at 1254.190 kb on - strand, within ABZR86_RS05540 at 1254.231 kb on + strand, within ABZR86_RS05540 at 1254.231 kb on + strand, within ABZR86_RS05540 at 1254.232 kb on - strand, within ABZR86_RS05540 at 1254.232 kb on - strand, within ABZR86_RS05540 at 1254.232 kb on - strand, within ABZR86_RS05540 at 1254.232 kb on - strand, within ABZR86_RS05540 at 1254.232 kb on - strand, within ABZR86_RS05540 at 1254.426 kb on + strand at 1254.520 kb on + strand at 1254.521 kb on - strand at 1254.524 kb on + strand at 1254.524 kb on + strand at 1254.525 kb on - strand at 1254.525 kb on - strand at 1254.525 kb on - strand at 1254.552 kb on - strand at 1254.565 kb on + strand at 1254.565 kb on + strand at 1254.565 kb on + strand at 1254.604 kb on + strand at 1254.604 kb on + strand at 1254.604 kb on + strand at 1254.604 kb on + strand at 1254.604 kb on + strand at 1254.605 kb on - strand at 1254.605 kb on - strand at 1254.694 kb on + strand, within ABZR86_RS05545 at 1254.694 kb on + strand, within ABZR86_RS05545 at 1254.694 kb on + strand, within ABZR86_RS05545 at 1254.695 kb on - strand, within ABZR86_RS05545 at 1254.695 kb on - strand, within ABZR86_RS05545 at 1254.695 kb on - strand, within ABZR86_RS05545 at 1254.695 kb on - strand, within ABZR86_RS05545 at 1254.695 kb on - strand, within ABZR86_RS05545 at 1254.695 kb on - strand, within ABZR86_RS05545 at 1254.695 kb on - strand, within ABZR86_RS05545 at 1254.701 kb on + strand, within ABZR86_RS05545 at 1254.701 kb on + strand, within ABZR86_RS05545 at 1254.701 kb on + strand, within ABZR86_RS05545 at 1254.701 kb on + strand, within ABZR86_RS05545 at 1254.701 kb on + strand, within ABZR86_RS05545 at 1254.701 kb on + strand, within ABZR86_RS05545 at 1254.701 kb on + strand, within ABZR86_RS05545 at 1254.702 kb on - strand, within ABZR86_RS05545 at 1254.702 kb on - strand, within ABZR86_RS05545 at 1254.702 kb on - strand, within ABZR86_RS05545 at 1254.702 kb on - strand, within ABZR86_RS05545 at 1254.745 kb on + strand, within ABZR86_RS05545 at 1254.745 kb on + strand, within ABZR86_RS05545 at 1254.745 kb on + strand, within ABZR86_RS05545 at 1254.822 kb on + strand, within ABZR86_RS05545 at 1254.964 kb on + strand, within ABZR86_RS05545 at 1254.965 kb on - strand, within ABZR86_RS05545 at 1254.965 kb on - strand, within ABZR86_RS05545 at 1255.221 kb on + strand, within ABZR86_RS05545 at 1255.222 kb on - strand, within ABZR86_RS05545 at 1255.222 kb on - strand, within ABZR86_RS05545 at 1255.468 kb on + strand at 1255.468 kb on + strand at 1255.469 kb on - strand at 1255.504 kb on - strand at 1255.504 kb on - strand at 1255.504 kb on - strand at 1255.667 kb on + strand at 1255.884 kb on + strand, within ABZR86_RS05550 at 1255.953 kb on - strand, within ABZR86_RS05550 at 1256.180 kb on + strand, within ABZR86_RS05550 at 1256.180 kb on + strand, within ABZR86_RS05550 at 1256.378 kb on + strand, within ABZR86_RS05550 at 1256.378 kb on + strand, within ABZR86_RS05550 at 1256.378 kb on + strand, within ABZR86_RS05550 at 1256.379 kb on - strand, within ABZR86_RS05550 at 1256.379 kb on - strand, within ABZR86_RS05550 at 1256.379 kb on - strand, within ABZR86_RS05550 at 1256.537 kb on + strand, within ABZR86_RS05550 at 1256.538 kb on - strand, within ABZR86_RS05550
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 1,253,565 + ABZR86_RS05540 0.49 +0.0 1,253,566 - ABZR86_RS05540 0.49 -1.0 1,253,566 - ABZR86_RS05540 0.49 -1.8 1,253,566 - ABZR86_RS05540 0.49 -0.5 1,253,687 - ABZR86_RS05540 0.55 +0.7 1,253,687 - ABZR86_RS05540 0.55 +0.3 1,253,821 - ABZR86_RS05540 0.62 -0.8 1,254,145 - ABZR86_RS05540 0.80 +0.1 1,254,145 - ABZR86_RS05540 0.80 +0.1 1,254,189 + ABZR86_RS05540 0.82 -0.6 1,254,189 + ABZR86_RS05540 0.82 -0.1 1,254,190 - ABZR86_RS05540 0.82 -0.1 1,254,231 + ABZR86_RS05540 0.84 -1.7 1,254,231 + ABZR86_RS05540 0.84 -0.8 1,254,232 - ABZR86_RS05540 0.84 +0.4 1,254,232 - ABZR86_RS05540 0.84 -0.1 1,254,232 - ABZR86_RS05540 0.84 -1.1 1,254,232 - ABZR86_RS05540 0.84 -0.5 1,254,232 - ABZR86_RS05540 0.84 -0.0 1,254,426 + -0.5 1,254,520 + -0.1 1,254,521 - -0.3 1,254,524 + -0.2 1,254,524 + +0.2 1,254,525 - +0.4 1,254,525 - +0.0 1,254,525 - +0.6 1,254,552 - +0.3 1,254,565 + +0.5 1,254,565 + -0.3 1,254,565 + -0.8 1,254,604 + -1.2 1,254,604 + -1.9 1,254,604 + -2.3 1,254,604 + -0.9 1,254,604 + +1.3 1,254,605 - +0.1 1,254,605 - -1.7 1,254,694 + ABZR86_RS05545 0.17 -0.4 1,254,694 + ABZR86_RS05545 0.17 -0.4 1,254,694 + ABZR86_RS05545 0.17 -0.5 1,254,695 - ABZR86_RS05545 0.17 -1.0 1,254,695 - ABZR86_RS05545 0.17 -1.4 1,254,695 - ABZR86_RS05545 0.17 -0.5 1,254,695 - ABZR86_RS05545 0.17 -2.6 1,254,695 - ABZR86_RS05545 0.17 -0.7 1,254,695 - ABZR86_RS05545 0.17 -0.5 1,254,695 - ABZR86_RS05545 0.17 -0.8 1,254,701 + ABZR86_RS05545 0.18 -0.7 1,254,701 + ABZR86_RS05545 0.18 -0.4 1,254,701 + ABZR86_RS05545 0.18 +0.3 1,254,701 + ABZR86_RS05545 0.18 -2.0 1,254,701 + ABZR86_RS05545 0.18 -1.5 1,254,701 + ABZR86_RS05545 0.18 -0.4 1,254,701 + ABZR86_RS05545 0.18 +0.7 1,254,702 - ABZR86_RS05545 0.18 -0.3 1,254,702 - ABZR86_RS05545 0.18 +0.3 1,254,702 - ABZR86_RS05545 0.18 -1.3 1,254,702 - ABZR86_RS05545 0.18 -0.8 1,254,745 + ABZR86_RS05545 0.22 -0.3 1,254,745 + ABZR86_RS05545 0.22 -0.7 1,254,745 + ABZR86_RS05545 0.22 -0.4 1,254,822 + ABZR86_RS05545 0.29 -1.2 1,254,964 + ABZR86_RS05545 0.43 -0.8 1,254,965 - ABZR86_RS05545 0.43 -0.6 1,254,965 - ABZR86_RS05545 0.43 +0.4 1,255,221 + ABZR86_RS05545 0.68 -1.2 1,255,222 - ABZR86_RS05545 0.68 -1.1 1,255,222 - ABZR86_RS05545 0.68 -1.8 1,255,468 + -0.4 1,255,468 + -2.2 1,255,469 - -0.5 1,255,504 - -1.0 1,255,504 - -2.1 1,255,504 - -0.3 1,255,667 + -2.2 1,255,884 + ABZR86_RS05550 0.28 -2.0 1,255,953 - ABZR86_RS05550 0.33 -1.8 1,256,180 + ABZR86_RS05550 0.53 +0.6 1,256,180 + ABZR86_RS05550 0.53 -0.8 1,256,378 + ABZR86_RS05550 0.70 -2.8 1,256,378 + ABZR86_RS05550 0.70 -1.5 1,256,378 + ABZR86_RS05550 0.70 -2.1 1,256,379 - ABZR86_RS05550 0.70 -1.5 1,256,379 - ABZR86_RS05550 0.70 -1.5 1,256,379 - ABZR86_RS05550 0.70 -0.7 1,256,537 + ABZR86_RS05550 0.83 -1.2 1,256,538 - ABZR86_RS05550 0.83 -1.1
Or see this region's nucleotide sequence