Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04825

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS04815 and ABZR86_RS04820 are separated by 8 nucleotidesABZR86_RS04820 and ABZR86_RS04825 are separated by 3 nucleotidesABZR86_RS04825 and ABZR86_RS04830 are separated by 11 nucleotides ABZR86_RS04815: ABZR86_RS04815 - hypothetical protein, at 1,078,192 to 1,079,061 _RS04815 ABZR86_RS04820: ABZR86_RS04820 - N-acetyltransferase, at 1,079,070 to 1,079,513 _RS04820 ABZR86_RS04825: ABZR86_RS04825 - NmrA family NAD(P)-binding protein, at 1,079,517 to 1,080,470 _RS04825 ABZR86_RS04830: ABZR86_RS04830 - LysR family transcriptional regulator, at 1,080,482 to 1,081,399 _RS04830 Position (kb) 1079 1080 1081Strain fitness (log2 ratio) -2 -1 0 1at 1078.651 kb on + strand, within ABZR86_RS04815at 1078.674 kb on + strand, within ABZR86_RS04815at 1078.674 kb on + strand, within ABZR86_RS04815at 1078.718 kb on - strand, within ABZR86_RS04815at 1078.865 kb on - strand, within ABZR86_RS04815at 1078.921 kb on + strand, within ABZR86_RS04815at 1078.921 kb on + strand, within ABZR86_RS04815at 1078.922 kb on - strand, within ABZR86_RS04815at 1078.924 kb on + strand, within ABZR86_RS04815at 1078.925 kb on - strand, within ABZR86_RS04815at 1079.190 kb on + strand, within ABZR86_RS04820at 1079.286 kb on - strand, within ABZR86_RS04820at 1079.298 kb on + strand, within ABZR86_RS04820at 1079.298 kb on + strand, within ABZR86_RS04820at 1079.299 kb on - strand, within ABZR86_RS04820at 1079.299 kb on - strand, within ABZR86_RS04820at 1079.299 kb on - strand, within ABZR86_RS04820at 1079.299 kb on - strand, within ABZR86_RS04820at 1080.221 kb on - strand, within ABZR86_RS04825at 1080.367 kb on + strand, within ABZR86_RS04825at 1080.367 kb on + strand, within ABZR86_RS04825at 1080.368 kb on - strand, within ABZR86_RS04825at 1080.765 kb on + strand, within ABZR86_RS04830at 1081.010 kb on + strand, within ABZR86_RS04830at 1081.011 kb on - strand, within ABZR86_RS04830at 1081.106 kb on + strand, within ABZR86_RS04830at 1081.106 kb on + strand, within ABZR86_RS04830at 1081.106 kb on + strand, within ABZR86_RS04830at 1081.107 kb on - strand, within ABZR86_RS04830at 1081.107 kb on - strand, within ABZR86_RS04830at 1081.107 kb on - strand, within ABZR86_RS04830at 1081.313 kb on + strandat 1081.313 kb on + strandat 1081.313 kb on + strandat 1081.314 kb on - strandat 1081.322 kb on + strandat 1081.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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1,078,651 + ABZR86_RS04815 0.53 -0.6
1,078,674 + ABZR86_RS04815 0.55 +0.2
1,078,674 + ABZR86_RS04815 0.55 -0.8
1,078,718 - ABZR86_RS04815 0.60 -0.1
1,078,865 - ABZR86_RS04815 0.77 -0.4
1,078,921 + ABZR86_RS04815 0.84 -0.6
1,078,921 + ABZR86_RS04815 0.84 +0.2
1,078,922 - ABZR86_RS04815 0.84 +0.1
1,078,924 + ABZR86_RS04815 0.84 -1.0
1,078,925 - ABZR86_RS04815 0.84 +0.2
1,079,190 + ABZR86_RS04820 0.27 -0.4
1,079,286 - ABZR86_RS04820 0.49 +1.1
1,079,298 + ABZR86_RS04820 0.51 +0.3
1,079,298 + ABZR86_RS04820 0.51 -0.2
1,079,299 - ABZR86_RS04820 0.52 +0.4
1,079,299 - ABZR86_RS04820 0.52 +1.1
1,079,299 - ABZR86_RS04820 0.52 +0.3
1,079,299 - ABZR86_RS04820 0.52 -0.1
1,080,221 - ABZR86_RS04825 0.74 -0.5
1,080,367 + ABZR86_RS04825 0.89 -0.8
1,080,367 + ABZR86_RS04825 0.89 -0.3
1,080,368 - ABZR86_RS04825 0.89 -0.5
1,080,765 + ABZR86_RS04830 0.31 -0.6
1,081,010 + ABZR86_RS04830 0.58 -0.5
1,081,011 - ABZR86_RS04830 0.58 -1.1
1,081,106 + ABZR86_RS04830 0.68 +0.2
1,081,106 + ABZR86_RS04830 0.68 -0.2
1,081,106 + ABZR86_RS04830 0.68 -1.8
1,081,107 - ABZR86_RS04830 0.68 +0.0
1,081,107 - ABZR86_RS04830 0.68 -0.0
1,081,107 - ABZR86_RS04830 0.68 +0.1
1,081,313 + -1.0
1,081,313 + +0.1
1,081,313 + +0.4
1,081,314 - +0.1
1,081,322 + +0.2
1,081,323 - -0.6

Or see this region's nucleotide sequence