Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04055

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS04050 and ABZR86_RS04055 are separated by 121 nucleotidesABZR86_RS04055 and ABZR86_RS04060 are separated by 54 nucleotides ABZR86_RS04050: ABZR86_RS04050 - DMT family transporter, at 891,423 to 892,286 _RS04050 ABZR86_RS04055: ABZR86_RS04055 - PLP-dependent aminotransferase family protein, at 892,408 to 893,799 _RS04055 ABZR86_RS04060: ABZR86_RS04060 - M13 family metallopeptidase, at 893,854 to 895,899 _RS04060 Position (kb) 892 893 894Strain fitness (log2 ratio) -1 0 1 2at 891.424 kb on + strandat 891.433 kb on + strandat 891.434 kb on - strandat 891.434 kb on - strandat 891.434 kb on - strandat 891.477 kb on + strandat 891.478 kb on - strandat 891.478 kb on - strandat 891.575 kb on + strand, within ABZR86_RS04050at 891.575 kb on + strand, within ABZR86_RS04050at 891.640 kb on + strand, within ABZR86_RS04050at 891.640 kb on + strand, within ABZR86_RS04050at 891.640 kb on + strand, within ABZR86_RS04050at 891.640 kb on + strand, within ABZR86_RS04050at 891.641 kb on - strand, within ABZR86_RS04050at 891.641 kb on - strand, within ABZR86_RS04050at 891.877 kb on + strand, within ABZR86_RS04050at 891.877 kb on + strand, within ABZR86_RS04050at 891.878 kb on - strand, within ABZR86_RS04050at 891.968 kb on + strand, within ABZR86_RS04050at 891.968 kb on + strand, within ABZR86_RS04050at 891.969 kb on - strand, within ABZR86_RS04050at 892.251 kb on - strandat 892.376 kb on - strandat 892.477 kb on + strandat 892.478 kb on - strandat 892.558 kb on + strand, within ABZR86_RS04055at 892.559 kb on - strand, within ABZR86_RS04055at 892.559 kb on - strand, within ABZR86_RS04055at 892.612 kb on + strand, within ABZR86_RS04055at 892.612 kb on + strand, within ABZR86_RS04055at 892.612 kb on + strand, within ABZR86_RS04055at 892.612 kb on + strand, within ABZR86_RS04055at 892.612 kb on + strand, within ABZR86_RS04055at 892.613 kb on - strand, within ABZR86_RS04055at 892.724 kb on + strand, within ABZR86_RS04055at 892.724 kb on + strand, within ABZR86_RS04055at 892.725 kb on - strand, within ABZR86_RS04055at 892.765 kb on + strand, within ABZR86_RS04055at 892.765 kb on + strand, within ABZR86_RS04055at 892.765 kb on + strand, within ABZR86_RS04055at 892.765 kb on + strand, within ABZR86_RS04055at 892.831 kb on + strand, within ABZR86_RS04055at 892.832 kb on - strand, within ABZR86_RS04055at 892.867 kb on + strand, within ABZR86_RS04055at 892.867 kb on + strand, within ABZR86_RS04055at 892.867 kb on + strand, within ABZR86_RS04055at 893.089 kb on - strand, within ABZR86_RS04055at 893.134 kb on + strand, within ABZR86_RS04055at 893.134 kb on + strand, within ABZR86_RS04055at 893.135 kb on - strand, within ABZR86_RS04055at 893.320 kb on - strand, within ABZR86_RS04055at 893.365 kb on + strand, within ABZR86_RS04055at 893.365 kb on + strand, within ABZR86_RS04055at 893.365 kb on + strand, within ABZR86_RS04055at 893.366 kb on - strand, within ABZR86_RS04055at 893.366 kb on - strand, within ABZR86_RS04055at 893.366 kb on - strand, within ABZR86_RS04055at 893.366 kb on - strand, within ABZR86_RS04055at 893.367 kb on + strand, within ABZR86_RS04055at 893.368 kb on - strand, within ABZR86_RS04055at 893.797 kb on + strandat 893.798 kb on - strandat 893.814 kb on + strandat 893.815 kb on - strandat 893.860 kb on + strandat 893.860 kb on + strandat 893.861 kb on - strandat 893.861 kb on - strandat 893.935 kb on + strandat 894.073 kb on - strand, within ABZR86_RS04060at 894.074 kb on + strand, within ABZR86_RS04060at 894.074 kb on + strand, within ABZR86_RS04060at 894.137 kb on + strand, within ABZR86_RS04060at 894.137 kb on + strand, within ABZR86_RS04060at 894.231 kb on - strand, within ABZR86_RS04060at 894.231 kb on - strand, within ABZR86_RS04060at 894.231 kb on - strand, within ABZR86_RS04060at 894.231 kb on - strand, within ABZR86_RS04060at 894.392 kb on + strand, within ABZR86_RS04060at 894.393 kb on - strand, within ABZR86_RS04060at 894.419 kb on + strand, within ABZR86_RS04060at 894.593 kb on + strand, within ABZR86_RS04060at 894.596 kb on + strand, within ABZR86_RS04060

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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891,424 + -0.8
891,433 + +0.1
891,434 - +0.3
891,434 - -0.2
891,434 - +0.3
891,477 + +0.4
891,478 - -0.4
891,478 - +0.7
891,575 + ABZR86_RS04050 0.18 +0.3
891,575 + ABZR86_RS04050 0.18 -0.2
891,640 + ABZR86_RS04050 0.25 -0.3
891,640 + ABZR86_RS04050 0.25 -0.1
891,640 + ABZR86_RS04050 0.25 +0.2
891,640 + ABZR86_RS04050 0.25 -1.1
891,641 - ABZR86_RS04050 0.25 +0.4
891,641 - ABZR86_RS04050 0.25 +1.9
891,877 + ABZR86_RS04050 0.53 -0.4
891,877 + ABZR86_RS04050 0.53 +0.5
891,878 - ABZR86_RS04050 0.53 +1.6
891,968 + ABZR86_RS04050 0.63 -0.2
891,968 + ABZR86_RS04050 0.63 +0.2
891,969 - ABZR86_RS04050 0.63 +1.0
892,251 - +0.2
892,376 - +1.0
892,477 + -0.2
892,478 - +0.2
892,558 + ABZR86_RS04055 0.11 -0.0
892,559 - ABZR86_RS04055 0.11 +0.2
892,559 - ABZR86_RS04055 0.11 -0.3
892,612 + ABZR86_RS04055 0.15 +0.6
892,612 + ABZR86_RS04055 0.15 +0.0
892,612 + ABZR86_RS04055 0.15 -0.1
892,612 + ABZR86_RS04055 0.15 -0.4
892,612 + ABZR86_RS04055 0.15 -0.4
892,613 - ABZR86_RS04055 0.15 +0.6
892,724 + ABZR86_RS04055 0.23 +0.0
892,724 + ABZR86_RS04055 0.23 +0.3
892,725 - ABZR86_RS04055 0.23 -0.6
892,765 + ABZR86_RS04055 0.26 -0.6
892,765 + ABZR86_RS04055 0.26 +0.4
892,765 + ABZR86_RS04055 0.26 -0.8
892,765 + ABZR86_RS04055 0.26 +0.5
892,831 + ABZR86_RS04055 0.30 +0.4
892,832 - ABZR86_RS04055 0.30 -0.4
892,867 + ABZR86_RS04055 0.33 -0.2
892,867 + ABZR86_RS04055 0.33 -0.5
892,867 + ABZR86_RS04055 0.33 +0.1
893,089 - ABZR86_RS04055 0.49 -0.4
893,134 + ABZR86_RS04055 0.52 -0.3
893,134 + ABZR86_RS04055 0.52 -0.1
893,135 - ABZR86_RS04055 0.52 -0.2
893,320 - ABZR86_RS04055 0.66 -0.0
893,365 + ABZR86_RS04055 0.69 +0.4
893,365 + ABZR86_RS04055 0.69 +1.1
893,365 + ABZR86_RS04055 0.69 -0.1
893,366 - ABZR86_RS04055 0.69 -0.5
893,366 - ABZR86_RS04055 0.69 -0.4
893,366 - ABZR86_RS04055 0.69 -0.1
893,366 - ABZR86_RS04055 0.69 -0.4
893,367 + ABZR86_RS04055 0.69 -1.1
893,368 - ABZR86_RS04055 0.69 +0.1
893,797 + +0.2
893,798 - +0.4
893,814 + -0.3
893,815 - -0.6
893,860 + +1.7
893,860 + -0.4
893,861 - +0.9
893,861 - +0.2
893,935 + -0.2
894,073 - ABZR86_RS04060 0.11 -0.0
894,074 + ABZR86_RS04060 0.11 -0.4
894,074 + ABZR86_RS04060 0.11 -0.7
894,137 + ABZR86_RS04060 0.14 -0.1
894,137 + ABZR86_RS04060 0.14 -0.0
894,231 - ABZR86_RS04060 0.18 +0.2
894,231 - ABZR86_RS04060 0.18 +0.1
894,231 - ABZR86_RS04060 0.18 -0.7
894,231 - ABZR86_RS04060 0.18 -0.1
894,392 + ABZR86_RS04060 0.26 +0.8
894,393 - ABZR86_RS04060 0.26 +0.8
894,419 + ABZR86_RS04060 0.28 -0.1
894,593 + ABZR86_RS04060 0.36 +0.8
894,596 + ABZR86_RS04060 0.36 -0.8

Or see this region's nucleotide sequence