Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02560 and ABZR86_RS02565 are separated by 164 nucleotides ABZR86_RS02565 and ABZR86_RS02570 are separated by 164 nucleotides ABZR86_RS02570 and ABZR86_RS02575 are separated by 311 nucleotides ABZR86_RS02575 and ABZR86_RS02580 are separated by 4 nucleotides
ABZR86_RS02560: ABZR86_RS02560 - lysozyme, at 520,920 to 521,390
_RS02560
ABZR86_RS02565: ABZR86_RS02565 - lysis system i-spanin subunit Rz, at 521,555 to 521,875
_RS02565
ABZR86_RS02570: ABZR86_RS02570 - HNH endonuclease signature motif containing protein, at 522,040 to 522,324
_RS02570
ABZR86_RS02575: ABZR86_RS02575 - hypothetical protein, at 522,636 to 522,923
_RS02575
ABZR86_RS02580: ABZR86_RS02580 - terminase large subunit, at 522,928 to 524,613
_RS02580
Position (kb) 522
523 Strain fitness (log2 ratio) -2
-1
0
1 at 521.091 kb on + strand, within ABZR86_RS02560 at 521.092 kb on - strand, within ABZR86_RS02560 at 521.116 kb on + strand, within ABZR86_RS02560 at 521.116 kb on + strand, within ABZR86_RS02560 at 521.117 kb on - strand, within ABZR86_RS02560 at 521.117 kb on - strand, within ABZR86_RS02560 at 521.313 kb on + strand, within ABZR86_RS02560 at 521.313 kb on + strand, within ABZR86_RS02560 at 521.372 kb on - strand at 521.438 kb on + strand at 521.439 kb on - strand at 521.439 kb on - strand at 521.478 kb on + strand at 521.478 kb on + strand at 521.479 kb on - strand at 521.479 kb on - strand at 521.494 kb on + strand at 521.495 kb on - strand at 521.613 kb on - strand, within ABZR86_RS02565 at 521.869 kb on + strand at 521.869 kb on + strand at 521.870 kb on - strand at 521.870 kb on - strand at 521.952 kb on + strand at 521.952 kb on + strand at 521.953 kb on - strand at 521.953 kb on - strand at 521.953 kb on - strand at 521.994 kb on + strand at 521.995 kb on - strand at 522.194 kb on + strand, within ABZR86_RS02570 at 522.194 kb on + strand, within ABZR86_RS02570 at 522.195 kb on - strand, within ABZR86_RS02570 at 522.195 kb on - strand, within ABZR86_RS02570 at 522.344 kb on + strand at 522.376 kb on - strand at 522.376 kb on - strand at 522.401 kb on + strand at 522.402 kb on - strand at 522.467 kb on + strand at 522.729 kb on + strand, within ABZR86_RS02575 at 522.729 kb on + strand, within ABZR86_RS02575 at 522.729 kb on + strand, within ABZR86_RS02575 at 522.730 kb on - strand, within ABZR86_RS02575 at 522.749 kb on + strand, within ABZR86_RS02575 at 522.749 kb on + strand, within ABZR86_RS02575 at 522.834 kb on - strand, within ABZR86_RS02575 at 522.927 kb on + strand at 522.927 kb on + strand at 522.927 kb on + strand at 522.927 kb on + strand at 522.927 kb on + strand at 522.928 kb on - strand at 522.928 kb on - strand at 522.928 kb on - strand at 522.928 kb on - strand at 523.004 kb on - strand at 523.052 kb on + strand at 523.053 kb on - strand at 523.103 kb on + strand, within ABZR86_RS02580 at 523.104 kb on - strand, within ABZR86_RS02580 at 523.104 kb on - strand, within ABZR86_RS02580 at 523.309 kb on + strand, within ABZR86_RS02580
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 521,091 + ABZR86_RS02560 0.36 +0.2 521,092 - ABZR86_RS02560 0.37 -0.3 521,116 + ABZR86_RS02560 0.42 -0.5 521,116 + ABZR86_RS02560 0.42 -0.2 521,117 - ABZR86_RS02560 0.42 -0.2 521,117 - ABZR86_RS02560 0.42 -0.2 521,313 + ABZR86_RS02560 0.83 +0.1 521,313 + ABZR86_RS02560 0.83 +0.1 521,372 - -0.0 521,438 + +0.3 521,439 - +0.5 521,439 - +0.3 521,478 + -0.3 521,478 + +0.3 521,479 - -0.3 521,479 - +1.0 521,494 + +0.6 521,495 - -0.2 521,613 - ABZR86_RS02565 0.18 -0.8 521,869 + -0.3 521,869 + -0.3 521,870 - +0.2 521,870 - +0.2 521,952 + +0.0 521,952 + +0.2 521,953 - -0.3 521,953 - -0.3 521,953 - +0.5 521,994 + +0.1 521,995 - -0.4 522,194 + ABZR86_RS02570 0.54 +0.7 522,194 + ABZR86_RS02570 0.54 +1.1 522,195 - ABZR86_RS02570 0.54 +1.1 522,195 - ABZR86_RS02570 0.54 +0.3 522,344 + -0.8 522,376 - +0.5 522,376 - +0.1 522,401 + -0.0 522,402 - +0.3 522,467 + +0.0 522,729 + ABZR86_RS02575 0.32 +0.4 522,729 + ABZR86_RS02575 0.32 -0.9 522,729 + ABZR86_RS02575 0.32 -1.1 522,730 - ABZR86_RS02575 0.33 +0.1 522,749 + ABZR86_RS02575 0.39 +1.1 522,749 + ABZR86_RS02575 0.39 -0.1 522,834 - ABZR86_RS02575 0.69 -0.1 522,927 + +0.7 522,927 + +0.2 522,927 + +0.0 522,927 + +0.2 522,927 + +0.2 522,928 - +0.2 522,928 - +0.9 522,928 - +1.1 522,928 - -0.2 523,004 - +0.1 523,052 + -0.5 523,053 - -2.5 523,103 + ABZR86_RS02580 0.10 -1.2 523,104 - ABZR86_RS02580 0.10 +0.6 523,104 - ABZR86_RS02580 0.10 +0.9 523,309 + ABZR86_RS02580 0.23 -0.0
Or see this region's nucleotide sequence