Experiment: Red Arabinan from sugar-beet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4453 and BT4454 are separated by 26 nucleotides BT4454 and BT4455 are separated by 56 nucleotides BT4455 and BT4456 overlap by 4 nucleotides
BT4453: BT4453 - 6-pyruvoyl-tetrahydropterin synthase (NCBI ptt file), at 5,864,331 to 5,864,705
BT4453
BT4454: BT4454 - conserved hypothetical protein (NCBI ptt file), at 5,864,732 to 5,865,280
BT4454
BT4455: BT4455 - oxidoreductase, putative glycolate oxidase (NCBI ptt file), at 5,865,337 to 5,866,077
BT4455
BT4456: BT4456 - putative electron transport protein (NCBI ptt file), at 5,866,074 to 5,867,459
BT4456
Position (kb) 5865
5866
5867 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5864.440 kb on - strand, within BT4453 at 5864.440 kb on - strand, within BT4453 at 5864.609 kb on + strand, within BT4453 at 5864.615 kb on - strand, within BT4453 at 5864.703 kb on + strand at 5865.085 kb on - strand, within BT4454 at 5865.119 kb on + strand, within BT4454 at 5865.133 kb on + strand, within BT4454 at 5865.134 kb on - strand, within BT4454 at 5865.134 kb on - strand, within BT4454 at 5865.134 kb on - strand, within BT4454 at 5865.136 kb on - strand, within BT4454 at 5865.139 kb on + strand, within BT4454 at 5865.233 kb on - strand at 5865.344 kb on + strand at 5865.365 kb on - strand at 5865.375 kb on + strand at 5865.376 kb on - strand at 5865.429 kb on - strand, within BT4455 at 5865.650 kb on - strand, within BT4455 at 5865.759 kb on - strand, within BT4455 at 5865.783 kb on + strand, within BT4455 at 5865.793 kb on + strand, within BT4455 at 5865.856 kb on - strand, within BT4455 at 5866.239 kb on + strand, within BT4456 at 5866.335 kb on + strand, within BT4456 at 5866.336 kb on - strand, within BT4456 at 5866.351 kb on - strand, within BT4456 at 5866.371 kb on - strand, within BT4456 at 5866.375 kb on + strand, within BT4456 at 5866.375 kb on + strand, within BT4456 at 5866.376 kb on - strand, within BT4456 at 5866.376 kb on - strand, within BT4456 at 5866.376 kb on - strand, within BT4456 at 5866.460 kb on - strand, within BT4456 at 5866.481 kb on + strand, within BT4456 at 5866.482 kb on - strand, within BT4456 at 5866.608 kb on + strand, within BT4456 at 5866.712 kb on - strand, within BT4456 at 5866.746 kb on - strand, within BT4456 at 5866.746 kb on - strand, within BT4456 at 5866.869 kb on + strand, within BT4456 at 5866.869 kb on + strand, within BT4456 at 5866.870 kb on - strand, within BT4456 at 5866.870 kb on - strand, within BT4456 at 5866.870 kb on - strand, within BT4456 at 5866.871 kb on + strand, within BT4456 at 5866.872 kb on - strand, within BT4456 at 5866.908 kb on + strand, within BT4456 at 5866.917 kb on - strand, within BT4456 at 5866.920 kb on - strand, within BT4456 at 5866.964 kb on + strand, within BT4456 at 5867.007 kb on - strand, within BT4456 at 5867.007 kb on - strand, within BT4456 at 5867.043 kb on + strand, within BT4456 at 5867.044 kb on - strand, within BT4456 at 5867.044 kb on - strand, within BT4456 at 5867.050 kb on - strand, within BT4456 at 5867.054 kb on + strand, within BT4456
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet remove 5,864,440 - BT4453 0.29 -1.2 5,864,440 - BT4453 0.29 +2.0 5,864,609 + BT4453 0.74 -2.6 5,864,615 - BT4453 0.76 -2.2 5,864,703 + -2.2 5,865,085 - BT4454 0.64 -1.6 5,865,119 + BT4454 0.70 -0.3 5,865,133 + BT4454 0.73 -0.4 5,865,134 - BT4454 0.73 -1.8 5,865,134 - BT4454 0.73 -0.7 5,865,134 - BT4454 0.73 -0.3 5,865,136 - BT4454 0.74 -1.8 5,865,139 + BT4454 0.74 +0.4 5,865,233 - -1.4 5,865,344 + -1.0 5,865,365 - +0.7 5,865,375 + -0.8 5,865,376 - -0.6 5,865,429 - BT4455 0.12 +2.0 5,865,650 - BT4455 0.42 -1.7 5,865,759 - BT4455 0.57 -1.3 5,865,783 + BT4455 0.60 -1.1 5,865,793 + BT4455 0.62 -2.9 5,865,856 - BT4455 0.70 -0.3 5,866,239 + BT4456 0.12 +2.6 5,866,335 + BT4456 0.19 -0.1 5,866,336 - BT4456 0.19 +0.4 5,866,351 - BT4456 0.20 +0.4 5,866,371 - BT4456 0.21 +0.0 5,866,375 + BT4456 0.22 -1.9 5,866,375 + BT4456 0.22 +0.4 5,866,376 - BT4456 0.22 +2.0 5,866,376 - BT4456 0.22 -0.6 5,866,376 - BT4456 0.22 -2.2 5,866,460 - BT4456 0.28 -1.1 5,866,481 + BT4456 0.29 -1.3 5,866,482 - BT4456 0.29 -4.3 5,866,608 + BT4456 0.39 -1.2 5,866,712 - BT4456 0.46 +0.6 5,866,746 - BT4456 0.48 -0.8 5,866,746 - BT4456 0.48 -0.3 5,866,869 + BT4456 0.57 -1.5 5,866,869 + BT4456 0.57 +0.0 5,866,870 - BT4456 0.57 -3.0 5,866,870 - BT4456 0.57 +0.0 5,866,870 - BT4456 0.57 -2.1 5,866,871 + BT4456 0.58 -1.3 5,866,872 - BT4456 0.58 +2.0 5,866,908 + BT4456 0.60 +0.4 5,866,917 - BT4456 0.61 -1.7 5,866,920 - BT4456 0.61 +1.0 5,866,964 + BT4456 0.64 -1.1 5,867,007 - BT4456 0.67 -1.3 5,867,007 - BT4456 0.67 -0.6 5,867,043 + BT4456 0.70 -0.3 5,867,044 - BT4456 0.70 -0.8 5,867,044 - BT4456 0.70 -1.4 5,867,050 - BT4456 0.70 -3.1 5,867,054 + BT4456 0.71 +0.4
Or see this region's nucleotide sequence