Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1826

Experiment: Red Arabinan from sugar-beet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet
2,286,178	-				-2.6
2,286,278	+		BT1825	0.22	-1.2
2,286,326	-		BT1825	0.32	+2.0
2,286,326	-		BT1825	0.32	-0.3
2,286,327	+		BT1825	0.32	-2.7
2,286,341	-		BT1825	0.35	-0.9
2,286,434	+		BT1825	0.53	-0.9
2,286,575	-		BT1825	0.81	-0.8
2,286,575	-		BT1825	0.81	-2.3
2,286,590	+		BT1825	0.84	-1.7
2,286,594	+		BT1825	0.84	+1.0
2,286,670	+				-2.1
2,286,671	-				-1.6
2,286,671	-				-1.7
2,286,671	-				-0.6
2,286,673	+				-1.6
2,286,718	-				-1.0
2,286,718	-				+0.4
2,286,752	-				-0.6
2,286,757	-				-0.6
2,286,789	-				-1.3
2,286,793	+				-0.3
2,286,799	+				-1.3
2,286,800	-				+0.0
2,286,800	-				-0.6
2,286,810	+				-2.5
2,286,853	+				+0.0
2,286,853	+				-1.5
2,286,853	+				+1.3
2,286,854	-				-1.8
2,286,857	+				-2.0
2,286,858	-				-1.9
2,286,858	-				+1.4
2,286,883	+				-0.8
2,286,889	+				+2.0
2,286,889	+				+0.5
2,286,892	+				-0.8
2,286,988	+				-1.0
2,286,989	-				-1.2
2,287,042	-				+0.0
2,287,067	+				-0.3
2,287,068	-				-2.4
2,287,114	-				+0.6
2,287,125	+				-1.8
2,287,155	+				-0.1
2,287,156	-				+0.4
2,287,168	+				-1.2
2,287,245	+				-1.6
2,287,257	+				-2.3
2,287,257	+				-1.5
2,287,258	-				-1.3
2,287,278	+				-0.8
2,287,278	+				+0.4
2,287,279	-				-2.4
2,287,283	-				-0.3
2,287,288	-				+0.3
2,287,291	+				-1.2
2,287,311	-				-1.5
2,287,312	+				-1.6
2,287,313	-				-0.1
2,287,313	-				-0.9
2,287,317	+				-0.4
2,287,326	+				-0.6
2,287,342	-				-1.6
2,287,384	-		BT1826	0.10	+0.0
2,287,389	+		BT1826	0.10	+1.8
2,287,389	+		BT1826	0.10	-0.1
2,287,392	-		BT1826	0.10	-0.8
2,287,435	+		BT1826	0.12	-1.4
2,287,436	-		BT1826	0.12	-2.1
2,287,525	-		BT1826	0.15	+0.3
2,287,525	-		BT1826	0.15	-0.1
2,287,525	-		BT1826	0.15	-1.6
2,287,532	-		BT1826	0.15	-0.9
2,287,537	-		BT1826	0.15	-1.7
2,287,537	-		BT1826	0.15	-1.8
2,287,550	-		BT1826	0.15	+0.0
2,287,550	-		BT1826	0.15	-0.7
2,287,568	-		BT1826	0.16	-0.1
2,287,581	+		BT1826	0.16	-2.4
2,287,582	-		BT1826	0.16	+1.0
2,287,626	+		BT1826	0.18	-1.3
2,287,635	+		BT1826	0.18	+0.1
2,287,636	-		BT1826	0.18	+0.0
2,287,636	-				+0.4
2,287,671	+		BT1826	0.19	-0.9
2,287,671	+		BT1826	0.19	-0.3
2,287,715	+		BT1826	0.21	-2.0
2,287,716	-		BT1826	0.21	-1.3
2,287,716	-		BT1826	0.21	-0.9
2,287,716	-		BT1826	0.21	-1.3
2,287,716	-		BT1826	0.21	-1.9
2,287,773	-		BT1826	0.22	-1.0
2,287,785	-		BT1826	0.23	-0.4
2,287,842	+		BT1826	0.25	-1.0
2,287,843	-		BT1826	0.25	-1.4
2,287,853	+		BT1826	0.25	-0.3
2,287,925	+		BT1826	0.27	-1.2
2,287,929	+		BT1826	0.27	-1.0
2,287,929	+		BT1826	0.27	-1.1
2,288,017	-		BT1826	0.30	-1.2
2,288,042	+		BT1826	0.31	+0.5
2,288,043	-		BT1826	0.31	-1.2
2,288,043	-		BT1826	0.31	-0.8
2,288,043	-		BT1826	0.31	-2.6
2,288,046	+		BT1826	0.31	-1.4
2,288,068	-		BT1826	0.32	+0.3
2,288,120	+		BT1826	0.34	+1.0
2,288,121	-		BT1826	0.34	-2.6
2,288,133	+		BT1826	0.34	-1.0
2,288,140	+		BT1826	0.34	+0.9
2,288,161	-		BT1826	0.35	-0.6
2,288,170	-		BT1826	0.35	-0.6
2,288,172	-		BT1826	0.35	-1.6
2,288,172	-		BT1826	0.35	+0.1
2,288,172	-		BT1826	0.35	+0.4
2,288,239	+		BT1826	0.37	-0.5
2,288,308	+		BT1826	0.40	-1.3
2,288,309	-		BT1826	0.40	+1.0
2,288,327	+		BT1826	0.40	-0.9
2,288,368	-		BT1826	0.42	-0.1
2,288,397	+		BT1826	0.43	+0.0
2,288,486	+		BT1826	0.45	-0.8
2,288,486	+		BT1826	0.45	+0.0
2,288,497	-		BT1826	0.46	-1.0
2,288,497	-		BT1826	0.46	-1.0
2,288,497	-		BT1826	0.46	+0.4
2,288,520	+		BT1826	0.46	-0.2
2,288,526	+		BT1826	0.47	-1.0
2,288,527	-		BT1826	0.47	-1.2
2,288,536	-		BT1826	0.47	-1.0
2,288,536	-		BT1826	0.47	-2.3
2,288,563	-		BT1826	0.48	+0.0
2,288,563	-		BT1826	0.48	-2.2
2,288,577	+		BT1826	0.48	-1.6
2,288,608	-		BT1826	0.49	-1.6
2,288,613	+		BT1826	0.49	-0.3
2,288,619	-		BT1826	0.50	+0.0
2,288,671	+		BT1826	0.51	+0.4
2,288,710	-		BT1826	0.53	-0.7
2,288,713	-		BT1826	0.53	+0.0
2,288,790	+		BT1826	0.55	+0.0
2,288,790	+		BT1826	0.55	-0.3
2,288,793	+		BT1826	0.55	-0.3
2,288,823	-		BT1826	0.56	-2.1
2,288,826	+		BT1826	0.56	-0.5
2,288,890	-		BT1826	0.58	-1.0
2,288,890	-		BT1826	0.58	-0.6
2,288,890	-		BT1826	0.58	+0.7
2,288,930	-		BT1826	0.60	-0.7
2,288,930	-		BT1826	0.60	-0.6
2,288,933	+		BT1826	0.60	-1.7
2,288,933	+		BT1826	0.60	-2.8
2,288,933	+		BT1826	0.60	-0.0
2,288,933	+		BT1826	0.60	-0.6
2,288,933	+		BT1826	0.60	-0.9
2,288,934	-		BT1826	0.60	-2.0
2,288,955	+		BT1826	0.60	-2.2
2,288,956	-		BT1826	0.60	-1.5
2,289,032	-		BT1826	0.63	+0.0
2,289,046	+		BT1826	0.63	-1.1
2,289,068	+		BT1826	0.64	-1.4
2,289,069	-		BT1826	0.64	+0.4
2,289,088	+		BT1826	0.65	-1.0
2,289,088	+		BT1826	0.65	-0.1
2,289,089	-		BT1826	0.65	-1.3
2,289,089	-		BT1826	0.65	-0.9
2,289,097	-		BT1826	0.65	+0.0
2,289,121	-		BT1826	0.66	+0.0
2,289,132	-		BT1826	0.66	-0.6
2,289,187	-		BT1826	0.68	-1.1
2,289,231	+		BT1826	0.69	+0.0
2,289,281	+		BT1826	0.71	+0.0
2,289,340	+				+2.0
2,289,341	-		BT1826	0.73	-0.3
2,289,344	+		BT1826	0.73	-2.2
2,289,344	+		BT1826	0.73	-1.2
2,289,345	-		BT1826	0.73	-2.1
2,289,345	-		BT1826	0.73	-0.3
2,289,345	-		BT1826	0.73	+0.0
2,289,345	-		BT1826	0.73	-1.8
2,289,348	+		BT1826	0.73	+0.0
2,289,349	-		BT1826	0.73	-0.7
2,289,404	+		BT1826	0.75	-0.8
2,289,430	-		BT1826	0.76	-1.6
2,289,509	-		BT1826	0.78	-1.3
2,289,527	+		BT1826	0.79	-2.7
2,289,528	-		BT1826	0.79	-0.3
2,289,552	+		BT1826	0.80	-1.7
2,289,554	+		BT1826	0.80	-2.9
2,289,555	-		BT1826	0.80	-0.6
2,289,624	+		BT1826	0.82	-1.4
2,289,786	+		BT1826	0.87	-1.0
2,289,814	+		BT1826	0.88	-1.0
2,289,819	+		BT1826	0.88	-1.0
2,289,820	-		BT1826	0.88	-1.5
2,289,843	+		BT1826	0.89	-1.5
2,289,850	-		BT1826	0.89	+2.0
2,289,969	+				-0.9
2,290,017	+				-1.4
2,290,021	-				-1.7
2,290,044	+				-1.4
2,290,045	-				+0.4
2,290,109	+				-0.8
2,290,128	-				-1.0
2,290,211	+				+2.0
2,290,214	+				+0.1
2,290,214	+				-0.3
2,290,214	+				-0.8
2,290,229	+				-1.5
2,290,262	-				+0.4
2,290,292	+				-1.3
2,290,294	+				+0.4
2,290,332	+				-0.3
2,290,400	-				+0.2
2,290,403	-				-1.3
2,290,405	-				-1.0
2,290,410	+				-1.9
2,290,440	+				-1.1
2,290,504	+				-0.3
2,290,548	+				-2.6
2,290,613	-				-1.0
2,290,654	-				-1.1
2,290,726	-		BT1827	0.17	+0.0
2,290,756	+		BT1827	0.21	+0.0
2,290,756	+		BT1827	0.21	-0.2
2,290,832	+		BT1827	0.29	-1.1
2,290,833	-		BT1827	0.29	-1.6
2,290,874	-		BT1827	0.33	-1.2
2,290,904	-		BT1827	0.36	-0.9
2,291,012	+		BT1827	0.48	-1.1
2,291,078	-		BT1827	0.55	-1.9
2,291,099	+		BT1827	0.57	-0.7
2,291,138	-		BT1827	0.61	-0.5
2,291,152	+		BT1827	0.63	-0.7