Experiment: Red Arabinan from sugar-beet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0590 and BT0591 are separated by 184 nucleotides BT0591 and BT0592 are separated by 95 nucleotides BT0592 and BT0593 are separated by 26 nucleotides
BT0590: BT0590 - CTP synthase (UTP-ammonia ligase) (NCBI ptt file), at 729,633 to 731,246
BT0590
BT0591: BT0591 - hypothetical protein (NCBI ptt file), at 731,431 to 732,882
BT0591
BT0592: BT0592 - conserved hypothetical protein (NCBI ptt file), at 732,978 to 733,763
BT0592
BT0593: BT0593 - conserved hypothetical protein (NCBI ptt file), at 733,790 to 734,155
BT0593
Position (kb) 731
732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.430 kb on + strand at 731.444 kb on + strand at 731.511 kb on + strand at 731.580 kb on - strand, within BT0591 at 731.641 kb on - strand, within BT0591 at 731.750 kb on - strand, within BT0591 at 731.853 kb on + strand, within BT0591 at 731.853 kb on + strand, within BT0591 at 731.866 kb on - strand, within BT0591 at 732.157 kb on + strand, within BT0591 at 732.215 kb on - strand, within BT0591 at 732.370 kb on + strand, within BT0591 at 732.372 kb on + strand, within BT0591 at 732.376 kb on - strand, within BT0591 at 732.391 kb on - strand, within BT0591 at 732.391 kb on - strand, within BT0591 at 732.556 kb on - strand, within BT0591 at 732.572 kb on + strand, within BT0591 at 732.573 kb on - strand, within BT0591 at 732.760 kb on + strand at 732.871 kb on + strand at 732.874 kb on - strand at 732.974 kb on - strand at 732.979 kb on + strand at 733.003 kb on + strand at 733.004 kb on - strand at 733.079 kb on - strand, within BT0592 at 733.097 kb on + strand, within BT0592 at 733.103 kb on + strand, within BT0592 at 733.257 kb on - strand, within BT0592 at 733.431 kb on - strand, within BT0592 at 733.639 kb on - strand, within BT0592 at 733.650 kb on + strand, within BT0592 at 733.751 kb on - strand at 733.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet remove 731,430 + -1.0 731,444 + +0.6 731,511 + +0.6 731,580 - BT0591 0.10 +1.6 731,641 - BT0591 0.14 -0.7 731,750 - BT0591 0.22 -1.0 731,853 + BT0591 0.29 -0.5 731,853 + BT0591 0.29 -1.8 731,866 - BT0591 0.30 +1.2 732,157 + BT0591 0.50 +1.2 732,215 - BT0591 0.54 -2.0 732,370 + BT0591 0.65 -1.5 732,372 + BT0591 0.65 +0.2 732,376 - BT0591 0.65 +0.6 732,391 - BT0591 0.66 -1.0 732,391 - BT0591 0.66 -0.2 732,556 - BT0591 0.77 -0.2 732,572 + BT0591 0.79 -0.7 732,573 - BT0591 0.79 -0.8 732,760 + -1.2 732,871 + -0.2 732,874 - -0.4 732,974 - -1.0 732,979 + -0.7 733,003 + +0.2 733,004 - +0.0 733,079 - BT0592 0.13 +0.4 733,097 + BT0592 0.15 -2.5 733,103 + BT0592 0.16 +2.2 733,257 - BT0592 0.35 +0.1 733,431 - BT0592 0.58 -1.5 733,639 - BT0592 0.84 -1.6 733,650 + BT0592 0.85 +0.4 733,751 - +0.2 733,751 - -0.2
Or see this region's nucleotide sequence