Experiment: Red Arabinan from sugar-beet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0069 and BT0070 are separated by 47 nucleotides BT0070 and BT0071 are separated by 303 nucleotides BT0071 and BT0072 are separated by 217 nucleotides BT0072 and BT0073 overlap by 16 nucleotides
BT0069: BT0069 - conserved hypothetical protein (NCBI ptt file), at 66,856 to 67,662
BT0069
BT0070: BT0070 - conserved hypothetical protein (NCBI ptt file), at 67,710 to 68,333
BT0070
BT0071: BT0071 - hypothetical protein (NCBI ptt file), at 68,637 to 69,134
BT0071
BT0072: BT0072 - putative ABC transporter, ATP-binding protein (NCBI ptt file), at 69,352 to 69,603
BT0072
BT0073: BT0073 - putative ABC transporter, ATP-binding protein (NCBI ptt file), at 69,588 to 71,018
BT0073
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.842 kb on + strand, within BT0070 at 67.864 kb on - strand, within BT0070 at 67.864 kb on - strand, within BT0070 at 67.869 kb on - strand, within BT0070 at 67.887 kb on - strand, within BT0070 at 67.902 kb on - strand, within BT0070 at 67.935 kb on - strand, within BT0070 at 68.024 kb on + strand, within BT0070 at 68.066 kb on + strand, within BT0070 at 68.070 kb on - strand, within BT0070 at 68.116 kb on - strand, within BT0070 at 68.131 kb on + strand, within BT0070 at 68.157 kb on - strand, within BT0070 at 68.193 kb on - strand, within BT0070 at 68.219 kb on + strand, within BT0070 at 68.270 kb on + strand, within BT0070 at 68.272 kb on + strand at 68.273 kb on - strand at 68.273 kb on - strand at 68.326 kb on + strand at 68.327 kb on - strand at 68.346 kb on - strand at 68.365 kb on + strand at 68.616 kb on - strand at 68.651 kb on - strand at 68.896 kb on - strand, within BT0071 at 68.904 kb on + strand, within BT0071 at 68.905 kb on - strand, within BT0071 at 68.938 kb on + strand, within BT0071 at 68.938 kb on + strand, within BT0071 at 68.938 kb on + strand, within BT0071 at 68.940 kb on + strand, within BT0071 at 68.941 kb on - strand, within BT0071 at 68.941 kb on - strand, within BT0071 at 68.941 kb on - strand, within BT0071 at 68.980 kb on + strand, within BT0071 at 69.068 kb on + strand, within BT0071 at 69.148 kb on + strand at 69.148 kb on + strand at 69.150 kb on + strand at 69.153 kb on - strand at 69.299 kb on + strand at 69.566 kb on - strand, within BT0072 at 69.589 kb on + strand at 69.875 kb on + strand, within BT0073 at 69.956 kb on + strand, within BT0073 at 69.984 kb on - strand, within BT0073
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet remove 67,842 + BT0070 0.21 -0.6 67,864 - BT0070 0.25 -0.4 67,864 - BT0070 0.25 -1.0 67,869 - BT0070 0.25 -1.4 67,887 - BT0070 0.28 -1.3 67,902 - BT0070 0.31 -1.0 67,935 - BT0070 0.36 -0.2 68,024 + BT0070 0.50 -2.2 68,066 + BT0070 0.57 -1.8 68,070 - BT0070 0.58 +2.0 68,116 - BT0070 0.65 -0.6 68,131 + BT0070 0.67 -0.7 68,157 - BT0070 0.72 +0.4 68,193 - BT0070 0.77 -0.6 68,219 + BT0070 0.82 -2.4 68,270 + BT0070 0.90 -1.4 68,272 + +2.0 68,273 - -0.6 68,273 - -1.6 68,326 + -2.3 68,327 - -0.9 68,346 - -2.4 68,365 + -2.1 68,616 - -1.2 68,651 - -0.2 68,896 - BT0071 0.52 -0.8 68,904 + BT0071 0.54 -2.3 68,905 - BT0071 0.54 -2.1 68,938 + BT0071 0.60 -2.6 68,938 + BT0071 0.60 +0.4 68,938 + BT0071 0.60 +1.0 68,940 + BT0071 0.61 +0.4 68,941 - BT0071 0.61 -1.8 68,941 - BT0071 0.61 -2.2 68,941 - BT0071 0.61 -1.7 68,980 + BT0071 0.69 -0.6 69,068 + BT0071 0.87 -1.4 69,148 + -1.2 69,148 + -0.6 69,150 + +0.0 69,153 - -0.8 69,299 + -1.2 69,566 - BT0072 0.85 +1.4 69,589 + -1.4 69,875 + BT0073 0.20 -1.6 69,956 + BT0073 0.26 -1.6 69,984 - BT0073 0.28 -2.2
Or see this region's nucleotide sequence