Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_973 and Pf1N1B4_974 are separated by 864 nucleotides Pf1N1B4_974 and Pf1N1B4_975 are separated by 184 nucleotides Pf1N1B4_975 and Pf1N1B4_976 are separated by 3 nucleotides Pf1N1B4_976 and Pf1N1B4_977 overlap by 4 nucleotides
Pf1N1B4_973 - Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-), at 1,101,569 to 1,102,477
_973
Pf1N1B4_974 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 1,103,342 to 1,103,851
_974
Pf1N1B4_975 - Molybdenum cofactor biosynthesis protein MoaE, at 1,104,036 to 1,104,488
_975
Pf1N1B4_976 - Molybdenum cofactor biosynthesis protein MoaD, at 1,104,492 to 1,104,734
_976
Pf1N1B4_977 - Molybdenum cofactor biosynthesis protein MoaC, at 1,104,731 to 1,105,204
_977
Position (kb)
1103
1104 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1102.479 kb on - strand at 1102.479 kb on - strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.484 kb on + strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.485 kb on - strand at 1102.487 kb on + strand at 1102.487 kb on + strand at 1102.487 kb on + strand at 1102.487 kb on + strand at 1102.487 kb on + strand at 1102.488 kb on - strand at 1102.488 kb on - strand at 1102.488 kb on - strand at 1102.488 kb on - strand at 1102.507 kb on + strand at 1102.507 kb on + strand at 1102.508 kb on - strand at 1102.508 kb on - strand at 1102.508 kb on - strand at 1102.525 kb on + strand at 1102.525 kb on + strand at 1102.526 kb on - strand at 1102.606 kb on + strand at 1102.668 kb on + strand at 1102.668 kb on + strand at 1102.668 kb on + strand at 1102.669 kb on - strand at 1102.697 kb on - strand at 1102.697 kb on - strand at 1102.697 kb on - strand at 1102.802 kb on + strand at 1102.802 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.841 kb on + strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.842 kb on - strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.845 kb on + strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.846 kb on - strand at 1102.849 kb on + strand at 1102.849 kb on + strand at 1102.849 kb on + strand at 1102.849 kb on + strand at 1102.849 kb on + strand at 1102.849 kb on + strand at 1102.850 kb on - strand at 1102.850 kb on - strand at 1102.850 kb on - strand at 1102.850 kb on - strand at 1102.859 kb on + strand at 1102.859 kb on + strand at 1102.859 kb on + strand at 1102.881 kb on + strand at 1102.882 kb on - strand at 1102.886 kb on + strand at 1102.886 kb on + strand at 1102.886 kb on + strand at 1102.886 kb on + strand at 1102.972 kb on + strand at 1102.972 kb on + strand at 1102.972 kb on + strand at 1102.972 kb on + strand at 1102.972 kb on + strand at 1102.972 kb on + strand at 1102.973 kb on - strand at 1102.976 kb on - strand at 1102.981 kb on + strand at 1102.982 kb on - strand at 1103.044 kb on + strand at 1103.044 kb on + strand at 1103.081 kb on + strand at 1103.081 kb on + strand at 1103.214 kb on + strand at 1103.214 kb on + strand at 1103.214 kb on + strand at 1103.215 kb on - strand at 1103.269 kb on + strand at 1103.328 kb on + strand at 1103.328 kb on + strand at 1103.328 kb on + strand at 1103.328 kb on + strand at 1103.328 kb on + strand at 1103.328 kb on + strand at 1103.329 kb on - strand at 1103.329 kb on - strand at 1103.335 kb on + strand at 1103.335 kb on + strand at 1103.335 kb on + strand at 1103.335 kb on + strand at 1103.335 kb on + strand at 1103.335 kb on + strand at 1103.335 kb on + strand at 1103.335 kb on + strand at 1103.335 kb on + strand at 1103.336 kb on - strand at 1103.336 kb on - strand at 1103.336 kb on - strand at 1103.336 kb on - strand at 1103.336 kb on - strand at 1103.336 kb on - strand at 1103.458 kb on + strand, within Pf1N1B4_974 at 1103.459 kb on - strand, within Pf1N1B4_974 at 1103.459 kb on - strand, within Pf1N1B4_974 at 1103.459 kb on - strand at 1103.574 kb on + strand, within Pf1N1B4_974 at 1103.574 kb on + strand, within Pf1N1B4_974 at 1103.574 kb on + strand, within Pf1N1B4_974 at 1103.575 kb on - strand, within Pf1N1B4_974 at 1103.760 kb on + strand, within Pf1N1B4_974 at 1103.761 kb on - strand, within Pf1N1B4_974 at 1103.761 kb on - strand, within Pf1N1B4_974 at 1103.761 kb on - strand, within Pf1N1B4_974 at 1103.897 kb on - strand at 1103.897 kb on - strand at 1103.897 kb on - strand at 1103.897 kb on - strand at 1103.897 kb on - strand at 1103.897 kb on - strand at 1103.897 kb on - strand at 1103.897 kb on - strand at 1103.897 kb on - strand at 1103.978 kb on + strand at 1103.979 kb on - strand at 1104.000 kb on - strand at 1104.037 kb on + strand at 1104.038 kb on - strand at 1104.038 kb on - strand at 1104.038 kb on - strand at 1104.145 kb on + strand, within Pf1N1B4_975 at 1104.145 kb on + strand, within Pf1N1B4_975 at 1104.146 kb on - strand, within Pf1N1B4_975 at 1104.146 kb on - strand, within Pf1N1B4_975 at 1104.601 kb on - strand, within Pf1N1B4_976 at 1104.834 kb on + strand, within Pf1N1B4_977 at 1104.834 kb on + strand, within Pf1N1B4_977 at 1104.834 kb on + strand, within Pf1N1B4_977 at 1104.834 kb on + strand, within Pf1N1B4_977 at 1104.834 kb on + strand, within Pf1N1B4_977 at 1104.834 kb on + strand, within Pf1N1B4_977 at 1104.834 kb on + strand, within Pf1N1B4_977 at 1104.835 kb on - strand, within Pf1N1B4_977 at 1104.835 kb on - strand, within Pf1N1B4_977 at 1104.835 kb on - strand, within Pf1N1B4_977 at 1104.835 kb on - strand, within Pf1N1B4_977 at 1104.835 kb on - strand, within Pf1N1B4_977
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,102,479 - -0.1 1,102,479 - +1.3 1,102,484 + -0.9 1,102,484 + +0.0 1,102,484 + -0.3 1,102,484 + -1.5 1,102,484 + +0.4 1,102,484 + -0.8 1,102,484 + -1.1 1,102,484 + +0.6 1,102,484 + +2.1 1,102,484 + +2.0 1,102,484 + +0.3 1,102,484 + +0.2 1,102,484 + -0.5 1,102,484 + +0.3 1,102,485 - +0.4 1,102,485 - +0.3 1,102,485 - +0.0 1,102,485 - +1.1 1,102,485 - +0.8 1,102,485 - -1.4 1,102,485 - +1.6 1,102,485 - -0.7 1,102,485 - +1.3 1,102,485 - -0.0 1,102,485 - -0.2 1,102,485 - +0.7 1,102,487 + +1.1 1,102,487 + +0.4 1,102,487 + -1.5 1,102,487 + +0.3 1,102,487 + -0.1 1,102,488 - +1.1 1,102,488 - -1.5 1,102,488 - +1.1 1,102,488 - -0.2 1,102,507 + -0.5 1,102,507 + -0.2 1,102,508 - +0.3 1,102,508 - -0.9 1,102,508 - +0.1 1,102,525 + +0.5 1,102,525 + -0.1 1,102,526 - +0.7 1,102,606 + -0.0 1,102,668 + -1.0 1,102,668 + +0.1 1,102,668 + +1.1 1,102,669 - +0.9 1,102,697 - -0.2 1,102,697 - +1.0 1,102,697 - -1.0 1,102,802 + +0.2 1,102,802 + -0.2 1,102,841 + -0.0 1,102,841 + -0.8 1,102,841 + -0.4 1,102,841 + +1.1 1,102,841 + +0.5 1,102,841 + -0.1 1,102,841 + +1.1 1,102,841 + -0.3 1,102,841 + +0.5 1,102,841 + -0.2 1,102,841 + -1.0 1,102,841 + +0.1 1,102,841 + -0.8 1,102,841 + +0.1 1,102,841 + +0.4 1,102,841 + -0.4 1,102,841 + -0.7 1,102,841 + +0.6 1,102,841 + -0.6 1,102,842 - -0.1 1,102,842 - +0.3 1,102,842 - -0.0 1,102,842 - -1.2 1,102,842 - +0.3 1,102,842 - -0.5 1,102,842 - +0.4 1,102,842 - +0.1 1,102,842 - +1.1 1,102,842 - +0.3 1,102,842 - -0.5 1,102,842 - -0.4 1,102,842 - +0.0 1,102,845 + -0.5 1,102,845 + -0.1 1,102,845 + +0.9 1,102,845 + -1.2 1,102,845 + -1.6 1,102,845 + +0.1 1,102,845 + -0.1 1,102,845 + -0.1 1,102,845 + +0.5 1,102,845 + +0.5 1,102,845 + +0.3 1,102,845 + +1.1 1,102,845 + +0.3 1,102,845 + -0.0 1,102,845 + +0.4 1,102,845 + +0.2 1,102,845 + +0.0 1,102,846 - +0.6 1,102,846 - +0.5 1,102,846 - +0.6 1,102,846 - -0.5 1,102,846 - -1.5 1,102,846 - -0.0 1,102,846 - +0.4 1,102,846 - +0.0 1,102,846 - +0.4 1,102,846 - +0.3 1,102,846 - -0.5 1,102,846 - -0.2 1,102,846 - +1.1 1,102,846 - +0.3 1,102,846 - -1.7 1,102,846 - -1.4 1,102,846 - +0.5 1,102,846 - -0.8 1,102,846 - -1.7 1,102,846 - +0.9 1,102,846 - -1.5 1,102,846 - +0.3 1,102,846 - +0.4 1,102,846 - +1.1 1,102,846 - +0.2 1,102,846 - +0.1 1,102,849 + +0.8 1,102,849 + -1.8 1,102,849 + +0.0 1,102,849 + -0.6 1,102,849 + +0.0 1,102,849 + -0.6 1,102,850 - +0.5 1,102,850 - +1.1 1,102,850 - -0.9 1,102,850 - +0.0 1,102,859 + +0.2 1,102,859 + -0.5 1,102,859 + -0.0 1,102,881 + +1.0 1,102,882 - +0.8 1,102,886 + -0.2 1,102,886 + +1.1 1,102,886 + +1.1 1,102,886 + -0.2 1,102,972 + +0.1 1,102,972 + +0.2 1,102,972 + +0.7 1,102,972 + +0.5 1,102,972 + -0.9 1,102,972 + -0.9 1,102,973 - +0.2 1,102,976 - -1.2 1,102,981 + +1.2 1,102,982 - -0.2 1,103,044 + -0.1 1,103,044 + -0.6 1,103,081 + +0.3 1,103,081 + +0.3 1,103,214 + -1.1 1,103,214 + +0.3 1,103,214 + +0.5 1,103,215 - +0.9 1,103,269 + +0.7 1,103,328 + +0.0 1,103,328 + +0.7 1,103,328 + +0.1 1,103,328 + -0.2 1,103,328 + +0.4 1,103,328 + -0.7 1,103,329 - -0.2 1,103,329 - +0.5 1,103,335 + -0.0 1,103,335 + -0.4 1,103,335 + -0.4 1,103,335 + -0.1 1,103,335 + +0.4 1,103,335 + +0.5 1,103,335 + +0.9 1,103,335 + +1.5 1,103,335 + +0.7 1,103,336 - +1.1 1,103,336 - -0.6 1,103,336 - +0.9 1,103,336 - -2.5 1,103,336 - -0.9 1,103,336 - -0.2 1,103,458 + Pf1N1B4_974 0.23 -0.0 1,103,459 - Pf1N1B4_974 0.23 +0.1 1,103,459 - Pf1N1B4_974 0.23 -1.7 1,103,459 - -0.9 1,103,574 + Pf1N1B4_974 0.45 -0.7 1,103,574 + Pf1N1B4_974 0.45 +0.3 1,103,574 + Pf1N1B4_974 0.45 -1.5 1,103,575 - Pf1N1B4_974 0.46 -0.9 1,103,760 + Pf1N1B4_974 0.82 -1.5 1,103,761 - Pf1N1B4_974 0.82 +1.1 1,103,761 - Pf1N1B4_974 0.82 +0.3 1,103,761 - Pf1N1B4_974 0.82 -0.4 1,103,897 - +0.1 1,103,897 - -1.0 1,103,897 - +0.7 1,103,897 - +1.7 1,103,897 - +1.5 1,103,897 - -0.0 1,103,897 - -0.6 1,103,897 - +1.1 1,103,897 - -0.7 1,103,978 + -1.2 1,103,979 - +2.1 1,104,000 - -0.1 1,104,037 + -0.1 1,104,038 - +1.1 1,104,038 - -0.2 1,104,038 - +0.3 1,104,145 + Pf1N1B4_975 0.24 +0.5 1,104,145 + Pf1N1B4_975 0.24 +1.7 1,104,146 - Pf1N1B4_975 0.24 -1.2 1,104,146 - Pf1N1B4_975 0.24 -0.9 1,104,601 - Pf1N1B4_976 0.45 -0.3 1,104,834 + Pf1N1B4_977 0.22 -0.7 1,104,834 + Pf1N1B4_977 0.22 +0.5 1,104,834 + Pf1N1B4_977 0.22 +0.5 1,104,834 + Pf1N1B4_977 0.22 +0.4 1,104,834 + Pf1N1B4_977 0.22 -1.0 1,104,834 + Pf1N1B4_977 0.22 -0.3 1,104,834 + Pf1N1B4_977 0.22 +1.7 1,104,835 - Pf1N1B4_977 0.22 +0.1 1,104,835 - Pf1N1B4_977 0.22 -1.5 1,104,835 - Pf1N1B4_977 0.22 -0.8 1,104,835 - Pf1N1B4_977 0.22 +0.1 1,104,835 - Pf1N1B4_977 0.22 +0.1
Or see this region's nucleotide sequence