Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_932

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_931 and Pf1N1B4_932 are separated by 143 nucleotidesPf1N1B4_932 and Pf1N1B4_933 are separated by 191 nucleotides Pf1N1B4_931 - Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1), at 1,056,166 to 1,057,308 _931 Pf1N1B4_932 - FIG00963370: hypothetical protein, at 1,057,452 to 1,057,709 _932 Pf1N1B4_933 - Mobile element protein, at 1,057,901 to 1,059,202 _933 Position (kb) 1057 1058Strain fitness (log2 ratio) -2 -1 0 1 2at 1056.467 kb on + strand, within Pf1N1B4_931at 1056.467 kb on + strand, within Pf1N1B4_931at 1056.528 kb on - strand, within Pf1N1B4_931at 1056.528 kb on - strand, within Pf1N1B4_931at 1056.561 kb on - strand, within Pf1N1B4_931at 1056.561 kb on - strand, within Pf1N1B4_931at 1056.561 kb on - strand, within Pf1N1B4_931at 1056.561 kb on - strand, within Pf1N1B4_931at 1056.737 kb on - strand, within Pf1N1B4_931at 1056.983 kb on + strand, within Pf1N1B4_931at 1057.080 kb on + strand, within Pf1N1B4_931at 1057.080 kb on + strand, within Pf1N1B4_931at 1057.165 kb on + strand, within Pf1N1B4_931at 1057.166 kb on - strand, within Pf1N1B4_931at 1057.423 kb on + strandat 1057.423 kb on + strandat 1057.423 kb on + strandat 1057.423 kb on + strandat 1057.423 kb on + strandat 1057.424 kb on - strandat 1057.424 kb on - strandat 1057.424 kb on - strandat 1057.427 kb on + strandat 1057.428 kb on - strandat 1057.442 kb on + strandat 1057.443 kb on - strandat 1057.450 kb on + strandat 1057.451 kb on - strandat 1057.461 kb on - strandat 1057.534 kb on + strand, within Pf1N1B4_932at 1057.534 kb on + strand, within Pf1N1B4_932at 1057.535 kb on - strand, within Pf1N1B4_932at 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.770 kb on + strandat 1057.771 kb on - strandat 1057.771 kb on - strandat 1057.771 kb on - strandat 1057.772 kb on + strandat 1057.772 kb on + strandat 1057.772 kb on + strandat 1057.772 kb on + strandat 1057.772 kb on + strandat 1057.772 kb on + strandat 1057.772 kb on + strandat 1057.772 kb on + strandat 1057.772 kb on + strandat 1057.773 kb on - strandat 1057.855 kb on - strandat 1057.855 kb on - strandat 1057.855 kb on - strandat 1057.855 kb on - strandat 1057.855 kb on - strandat 1057.855 kb on - strandat 1057.855 kb on - strandat 1057.855 kb on - strandat 1057.879 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,056,467 + Pf1N1B4_931 0.26 -1.7
1,056,467 + Pf1N1B4_931 0.26 +0.7
1,056,528 - Pf1N1B4_931 0.32 -0.1
1,056,528 - Pf1N1B4_931 0.32 +1.1
1,056,561 - Pf1N1B4_931 0.35 +0.8
1,056,561 - Pf1N1B4_931 0.35 +0.4
1,056,561 - Pf1N1B4_931 0.35 +0.1
1,056,561 - Pf1N1B4_931 0.35 -0.6
1,056,737 - Pf1N1B4_931 0.50 -0.7
1,056,983 + Pf1N1B4_931 0.71 -1.1
1,057,080 + Pf1N1B4_931 0.80 -0.2
1,057,080 + Pf1N1B4_931 0.80 +0.1
1,057,165 + Pf1N1B4_931 0.87 +0.1
1,057,166 - Pf1N1B4_931 0.87 -0.5
1,057,423 + +2.7
1,057,423 + +0.1
1,057,423 + +2.1
1,057,423 + -0.0
1,057,423 + +0.0
1,057,424 - +1.7
1,057,424 - -0.7
1,057,424 - -2.1
1,057,427 + -0.1
1,057,428 - -0.7
1,057,442 + -0.5
1,057,443 - -1.2
1,057,450 + -0.2
1,057,451 - +1.7
1,057,461 - -0.3
1,057,534 + Pf1N1B4_932 0.32 -0.4
1,057,534 + Pf1N1B4_932 0.32 -1.5
1,057,535 - Pf1N1B4_932 0.32 -0.9
1,057,770 + -2.1
1,057,770 + +0.3
1,057,770 + -0.1
1,057,770 + -0.2
1,057,770 + -0.5
1,057,770 + +1.0
1,057,770 + +0.4
1,057,770 + -0.1
1,057,770 + -1.1
1,057,770 + +0.1
1,057,771 - -0.2
1,057,771 - -0.9
1,057,771 - +0.3
1,057,772 + -1.5
1,057,772 + +1.1
1,057,772 + +0.1
1,057,772 + -0.2
1,057,772 + -0.0
1,057,772 + +2.1
1,057,772 + -1.2
1,057,772 + +0.7
1,057,772 + -0.2
1,057,773 - -1.1
1,057,855 - +0.7
1,057,855 - +0.5
1,057,855 - -1.0
1,057,855 - +0.3
1,057,855 - +0.9
1,057,855 - +0.7
1,057,855 - +1.1
1,057,855 - +1.1
1,057,879 - +0.3

Or see this region's nucleotide sequence