Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5956 and Pf1N1B4_5957 overlap by 1 nucleotides Pf1N1B4_5957 and Pf1N1B4_5958 are separated by 183 nucleotides
Pf1N1B4_5956 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 404,651 to 405,703
_5956
Pf1N1B4_5957 - Arsenical resistance operon repressor, at 405,703 to 406,065
_5957
Pf1N1B4_5958 - Ferrichrome-iron receptor, at 406,249 to 408,372
_5958
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 404.727 kb on + strand at 404.727 kb on + strand at 404.727 kb on + strand at 404.728 kb on - strand at 404.728 kb on - strand at 404.728 kb on - strand at 404.728 kb on - strand at 405.334 kb on - strand, within Pf1N1B4_5956 at 405.650 kb on - strand at 405.852 kb on - strand, within Pf1N1B4_5957 at 405.854 kb on + strand, within Pf1N1B4_5957 at 405.855 kb on - strand, within Pf1N1B4_5957 at 405.897 kb on + strand, within Pf1N1B4_5957 at 405.898 kb on - strand, within Pf1N1B4_5957 at 406.106 kb on + strand at 406.133 kb on - strand at 406.149 kb on - strand at 406.270 kb on + strand at 406.307 kb on + strand at 406.308 kb on - strand at 406.308 kb on - strand at 406.388 kb on - strand at 406.603 kb on + strand, within Pf1N1B4_5958 at 406.603 kb on + strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand at 406.634 kb on - strand, within Pf1N1B4_5958 at 406.634 kb on - strand, within Pf1N1B4_5958 at 406.728 kb on + strand, within Pf1N1B4_5958 at 406.729 kb on - strand at 406.729 kb on - strand, within Pf1N1B4_5958 at 406.729 kb on - strand, within Pf1N1B4_5958 at 406.903 kb on + strand, within Pf1N1B4_5958 at 406.904 kb on - strand, within Pf1N1B4_5958 at 406.904 kb on - strand, within Pf1N1B4_5958
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 404,727 + -1.1 404,727 + -2.8 404,727 + -0.8 404,728 - +1.5 404,728 - +0.9 404,728 - -1.1 404,728 - -0.5 405,334 - Pf1N1B4_5956 0.65 +1.1 405,650 - +1.5 405,852 - Pf1N1B4_5957 0.41 -3.2 405,854 + Pf1N1B4_5957 0.42 +0.5 405,855 - Pf1N1B4_5957 0.42 +0.5 405,897 + Pf1N1B4_5957 0.53 -2.1 405,898 - Pf1N1B4_5957 0.54 -0.0 406,106 + +1.2 406,133 - -1.1 406,149 - -0.7 406,270 + +0.8 406,307 + +2.1 406,308 - +0.3 406,308 - -1.1 406,388 - -0.7 406,603 + Pf1N1B4_5958 0.17 +0.1 406,603 + Pf1N1B4_5958 0.17 +0.3 406,604 - Pf1N1B4_5958 0.17 +2.5 406,604 - Pf1N1B4_5958 0.17 +0.1 406,604 - Pf1N1B4_5958 0.17 -0.5 406,604 - Pf1N1B4_5958 0.17 -0.5 406,604 - Pf1N1B4_5958 0.17 -2.8 406,604 - -0.5 406,634 - Pf1N1B4_5958 0.18 -2.1 406,634 - Pf1N1B4_5958 0.18 +0.9 406,728 + Pf1N1B4_5958 0.23 +0.2 406,729 - -0.1 406,729 - Pf1N1B4_5958 0.23 +0.5 406,729 - Pf1N1B4_5958 0.23 +1.1 406,903 + Pf1N1B4_5958 0.31 -0.5 406,904 - Pf1N1B4_5958 0.31 -0.7 406,904 - Pf1N1B4_5958 0.31 +1.1
Or see this region's nucleotide sequence