Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5910 and Pf1N1B4_5911 overlap by 8 nucleotides Pf1N1B4_5911 and Pf1N1B4_5912 are separated by 275 nucleotides Pf1N1B4_5912 and Pf1N1B4_5913 are separated by 151 nucleotides Pf1N1B4_5913 and Pf1N1B4_5914 are separated by 210 nucleotides
Pf1N1B4_5910 - putative membrane protein, at 353,971 to 354,561
_5910
Pf1N1B4_5911 - DoxX family protein, at 354,554 to 354,970
_5911
Pf1N1B4_5912 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 355,246 to 355,614
_5912
Pf1N1B4_5913 - hypothetical protein, at 355,766 to 355,930
_5913
Pf1N1B4_5914 - Transcriptional regulator, LysR family, at 356,141 to 357,064
_5914
Position (kb) 355
356 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.801 kb on - strand at 354.858 kb on + strand, within Pf1N1B4_5911 at 354.858 kb on + strand at 355.036 kb on + strand at 355.036 kb on + strand at 355.037 kb on - strand at 355.037 kb on - strand at 355.037 kb on - strand at 355.341 kb on + strand, within Pf1N1B4_5912 at 355.342 kb on - strand, within Pf1N1B4_5912 at 355.342 kb on - strand, within Pf1N1B4_5912 at 355.427 kb on - strand, within Pf1N1B4_5912 at 355.427 kb on - strand, within Pf1N1B4_5912 at 355.460 kb on + strand at 355.565 kb on + strand, within Pf1N1B4_5912 at 355.565 kb on + strand, within Pf1N1B4_5912 at 355.631 kb on - strand at 355.631 kb on - strand at 355.668 kb on - strand at 355.668 kb on - strand at 355.706 kb on + strand at 355.706 kb on + strand at 355.706 kb on + strand at 355.707 kb on - strand at 355.707 kb on - strand at 355.707 kb on - strand at 355.708 kb on + strand at 355.708 kb on + strand at 355.708 kb on + strand at 355.708 kb on + strand at 355.781 kb on + strand at 355.782 kb on - strand at 355.803 kb on + strand, within Pf1N1B4_5913 at 355.805 kb on + strand, within Pf1N1B4_5913 at 355.806 kb on - strand at 355.928 kb on + strand at 355.929 kb on - strand at 355.929 kb on - strand at 355.929 kb on - strand at 355.943 kb on - strand at 355.943 kb on - strand at 355.958 kb on + strand at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.322 kb on + strand, within Pf1N1B4_5914 at 356.598 kb on + strand, within Pf1N1B4_5914
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 354,801 - +1.5 354,858 + Pf1N1B4_5911 0.73 -0.9 354,858 + -0.5 355,036 + -0.2 355,036 + -0.2 355,037 - +0.7 355,037 - +0.2 355,037 - -0.5 355,341 + Pf1N1B4_5912 0.26 +1.8 355,342 - Pf1N1B4_5912 0.26 -1.0 355,342 - Pf1N1B4_5912 0.26 -0.3 355,427 - Pf1N1B4_5912 0.49 -1.8 355,427 - Pf1N1B4_5912 0.49 +2.2 355,460 + +0.1 355,565 + Pf1N1B4_5912 0.86 -1.5 355,565 + Pf1N1B4_5912 0.86 -1.0 355,631 - +0.9 355,631 - +1.7 355,668 - -1.9 355,668 - +0.0 355,706 + -1.5 355,706 + -0.7 355,706 + +0.5 355,707 - -1.8 355,707 - +0.8 355,707 - +0.4 355,708 + +0.5 355,708 + +0.1 355,708 + +1.1 355,708 + -1.5 355,781 + -0.1 355,782 - +0.5 355,803 + Pf1N1B4_5913 0.22 +0.9 355,805 + Pf1N1B4_5913 0.24 +0.2 355,806 - -1.3 355,928 + -0.3 355,929 - -2.5 355,929 - -0.2 355,929 - -0.7 355,943 - +0.5 355,943 - +0.3 355,958 + +1.2 356,293 + Pf1N1B4_5914 0.16 -1.2 356,293 + Pf1N1B4_5914 0.16 -0.7 356,293 + Pf1N1B4_5914 0.16 -0.1 356,293 + Pf1N1B4_5914 0.16 +0.2 356,293 + Pf1N1B4_5914 0.16 +0.5 356,322 + Pf1N1B4_5914 0.20 -0.6 356,598 + Pf1N1B4_5914 0.49 -2.1
Or see this region's nucleotide sequence