Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5828 and Pf1N1B4_5829 are separated by 124 nucleotides Pf1N1B4_5829 and Pf1N1B4_5830 are separated by 3 nucleotides Pf1N1B4_5830 and Pf1N1B4_5831 are separated by 354 nucleotides
Pf1N1B4_5828 - Mobile element protein, at 262,198 to 263,499
_5828
Pf1N1B4_5829 - FIG005107: hypothetical protein, at 263,624 to 264,382
_5829
Pf1N1B4_5830 - FIG023677: hypothetical protein, at 264,386 to 265,153
_5830
Pf1N1B4_5831 - SAM-dependent methyltransferases, at 265,508 to 266,557
_5831
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1 at 263.507 kb on + strand at 263.511 kb on + strand at 263.515 kb on + strand at 263.515 kb on + strand at 263.920 kb on - strand, within Pf1N1B4_5829 at 264.037 kb on - strand, within Pf1N1B4_5829 at 264.498 kb on + strand, within Pf1N1B4_5830 at 264.499 kb on - strand, within Pf1N1B4_5830 at 264.672 kb on + strand, within Pf1N1B4_5830 at 264.771 kb on + strand, within Pf1N1B4_5830 at 264.883 kb on - strand, within Pf1N1B4_5830 at 264.906 kb on + strand at 264.924 kb on + strand, within Pf1N1B4_5830 at 264.925 kb on - strand, within Pf1N1B4_5830 at 265.359 kb on - strand at 265.359 kb on - strand at 265.378 kb on - strand at 265.384 kb on - strand at 265.384 kb on - strand at 265.384 kb on - strand at 265.802 kb on + strand, within Pf1N1B4_5831 at 265.802 kb on + strand, within Pf1N1B4_5831 at 265.950 kb on - strand, within Pf1N1B4_5831 at 266.108 kb on + strand, within Pf1N1B4_5831
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 263,507 + -0.4 263,511 + -0.0 263,515 + -1.1 263,515 + -0.7 263,920 - Pf1N1B4_5829 0.39 +0.5 264,037 - Pf1N1B4_5829 0.54 +0.4 264,498 + Pf1N1B4_5830 0.15 -1.8 264,499 - Pf1N1B4_5830 0.15 -0.6 264,672 + Pf1N1B4_5830 0.37 +1.5 264,771 + Pf1N1B4_5830 0.50 -1.1 264,883 - Pf1N1B4_5830 0.65 +0.3 264,906 + -0.1 264,924 + Pf1N1B4_5830 0.70 -1.0 264,925 - Pf1N1B4_5830 0.70 -0.7 265,359 - -0.5 265,359 - -0.7 265,378 - +0.7 265,384 - -2.1 265,384 - -0.1 265,384 - -0.5 265,802 + Pf1N1B4_5831 0.28 +0.1 265,802 + Pf1N1B4_5831 0.28 +1.2 265,950 - Pf1N1B4_5831 0.42 -0.2 266,108 + Pf1N1B4_5831 0.57 +0.9
Or see this region's nucleotide sequence