Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_571

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_569 and Pf1N1B4_570 are separated by 172 nucleotidesPf1N1B4_570 and Pf1N1B4_571 are separated by 191 nucleotidesPf1N1B4_571 and Pf1N1B4_572 are separated by 162 nucleotides Pf1N1B4_569 - Ribonuclease BN (EC 3.1.-.-), at 663,890 to 664,834 _569 Pf1N1B4_570 - hypothetical protein, at 665,007 to 665,198 _570 Pf1N1B4_571 - FIG00954271: hypothetical protein, at 665,390 to 665,767 _571 Pf1N1B4_572 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 665,930 to 666,955 _572 Position (kb) 665 666Strain fitness (log2 ratio) -2 -1 0 1 2at 664.416 kb on + strandat 664.470 kb on + strand, within Pf1N1B4_569at 664.471 kb on - strand, within Pf1N1B4_569at 664.471 kb on - strand, within Pf1N1B4_569at 664.471 kb on - strand, within Pf1N1B4_569at 664.746 kb on + strandat 664.746 kb on + strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.783 kb on + strandat 664.784 kb on - strandat 664.892 kb on + strandat 664.892 kb on + strandat 664.907 kb on + strandat 664.907 kb on + strandat 664.907 kb on + strandat 664.907 kb on + strandat 664.907 kb on + strandat 664.936 kb on + strandat 664.936 kb on + strandat 664.936 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 665.009 kb on - strandat 665.180 kb on + strandat 665.201 kb on + strandat 665.201 kb on + strandat 665.202 kb on - strandat 665.278 kb on + strandat 665.282 kb on + strandat 665.282 kb on + strandat 665.283 kb on - strandat 665.305 kb on + strandat 665.312 kb on + strandat 665.313 kb on - strandat 665.347 kb on + strandat 665.347 kb on + strandat 665.347 kb on + strandat 665.347 kb on + strandat 665.347 kb on + strandat 665.348 kb on - strandat 665.497 kb on + strand, within Pf1N1B4_571at 665.498 kb on - strand, within Pf1N1B4_571at 665.498 kb on - strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.600 kb on - strandat 665.600 kb on - strand, within Pf1N1B4_571at 665.600 kb on - strand, within Pf1N1B4_571at 665.600 kb on - strand, within Pf1N1B4_571at 665.708 kb on + strand, within Pf1N1B4_571at 665.709 kb on - strand, within Pf1N1B4_571at 665.709 kb on - strand, within Pf1N1B4_571at 666.054 kb on + strandat 666.128 kb on - strand, within Pf1N1B4_572at 666.128 kb on - strand, within Pf1N1B4_572at 666.128 kb on - strand, within Pf1N1B4_572at 666.231 kb on + strand, within Pf1N1B4_572at 666.232 kb on - strand, within Pf1N1B4_572at 666.232 kb on - strand, within Pf1N1B4_572at 666.232 kb on - strand, within Pf1N1B4_572at 666.288 kb on + strand, within Pf1N1B4_572at 666.288 kb on + strand, within Pf1N1B4_572at 666.288 kb on + strand, within Pf1N1B4_572at 666.288 kb on + strand, within Pf1N1B4_572at 666.288 kb on + strand, within Pf1N1B4_572at 666.288 kb on + strand, within Pf1N1B4_572at 666.289 kb on - strand, within Pf1N1B4_572at 666.289 kb on - strand, within Pf1N1B4_572at 666.289 kb on - strand, within Pf1N1B4_572at 666.347 kb on + strand, within Pf1N1B4_572at 666.347 kb on + strandat 666.347 kb on + strand, within Pf1N1B4_572at 666.347 kb on + strand, within Pf1N1B4_572at 666.348 kb on - strand, within Pf1N1B4_572at 666.348 kb on - strand, within Pf1N1B4_572at 666.348 kb on - strand, within Pf1N1B4_572at 666.348 kb on - strand, within Pf1N1B4_572at 666.348 kb on - strand, within Pf1N1B4_572at 666.348 kb on - strand, within Pf1N1B4_572at 666.348 kb on - strand, within Pf1N1B4_572at 666.348 kb on - strand, within Pf1N1B4_572at 666.378 kb on + strand, within Pf1N1B4_572at 666.379 kb on - strand, within Pf1N1B4_572at 666.487 kb on + strand, within Pf1N1B4_572

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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664,416 + +1.0
664,470 + Pf1N1B4_569 0.61 +0.3
664,471 - Pf1N1B4_569 0.61 +1.0
664,471 - Pf1N1B4_569 0.61 +1.0
664,471 - Pf1N1B4_569 0.61 +0.7
664,746 + +0.1
664,746 + +1.3
664,747 - -1.9
664,747 - +0.4
664,747 - +0.5
664,747 - -1.0
664,747 - -0.0
664,747 - +1.0
664,747 - -0.6
664,747 - -0.3
664,783 + +1.0
664,784 - +2.0
664,892 + -1.4
664,892 + -0.6
664,907 + +0.7
664,907 + -0.6
664,907 + -1.6
664,907 + +1.5
664,907 + +1.0
664,936 + +0.8
664,936 + -0.0
664,936 + -0.3
664,938 + -1.4
664,938 + +1.2
664,938 + +2.5
664,938 + +0.2
664,938 + +0.5
664,938 + +0.2
664,938 + +0.6
665,009 - -0.3
665,180 + +1.0
665,201 + +0.5
665,201 + -0.5
665,202 - +0.5
665,278 + -0.0
665,282 + -1.0
665,282 + -0.0
665,283 - -0.6
665,305 + -0.0
665,312 + -0.0
665,313 - -0.0
665,347 + +0.5
665,347 + +0.4
665,347 + +0.2
665,347 + -0.4
665,347 + -0.2
665,348 - -0.9
665,497 + Pf1N1B4_571 0.28 +1.9
665,498 - Pf1N1B4_571 0.29 -0.0
665,498 - Pf1N1B4_571 0.29 +0.1
665,599 + Pf1N1B4_571 0.55 +0.7
665,599 + Pf1N1B4_571 0.55 -0.0
665,599 + Pf1N1B4_571 0.55 +1.3
665,599 + Pf1N1B4_571 0.55 -0.3
665,599 + Pf1N1B4_571 0.55 -1.6
665,599 + Pf1N1B4_571 0.55 +0.8
665,599 + Pf1N1B4_571 0.55 -0.5
665,599 + Pf1N1B4_571 0.55 +1.0
665,600 - +2.5
665,600 - Pf1N1B4_571 0.56 +1.0
665,600 - Pf1N1B4_571 0.56 +0.3
665,600 - Pf1N1B4_571 0.56 +1.2
665,708 + Pf1N1B4_571 0.84 +0.4
665,709 - Pf1N1B4_571 0.84 +0.3
665,709 - Pf1N1B4_571 0.84 +0.7
666,054 + +2.0
666,128 - Pf1N1B4_572 0.19 -0.0
666,128 - Pf1N1B4_572 0.19 +0.0
666,128 - Pf1N1B4_572 0.19 +0.3
666,231 + Pf1N1B4_572 0.29 -0.0
666,232 - Pf1N1B4_572 0.29 +0.4
666,232 - Pf1N1B4_572 0.29 +0.8
666,232 - Pf1N1B4_572 0.29 -0.2
666,288 + Pf1N1B4_572 0.35 -0.6
666,288 + Pf1N1B4_572 0.35 +1.2
666,288 + Pf1N1B4_572 0.35 +1.4
666,288 + Pf1N1B4_572 0.35 -1.0
666,288 + Pf1N1B4_572 0.35 -0.3
666,288 + Pf1N1B4_572 0.35 +0.8
666,289 - Pf1N1B4_572 0.35 +1.5
666,289 - Pf1N1B4_572 0.35 +0.4
666,289 - Pf1N1B4_572 0.35 -0.3
666,347 + Pf1N1B4_572 0.41 +2.0
666,347 + -0.0
666,347 + Pf1N1B4_572 0.41 +0.7
666,347 + Pf1N1B4_572 0.41 +0.1
666,348 - Pf1N1B4_572 0.41 +1.0
666,348 - Pf1N1B4_572 0.41 -0.0
666,348 - Pf1N1B4_572 0.41 +0.2
666,348 - Pf1N1B4_572 0.41 -0.0
666,348 - Pf1N1B4_572 0.41 -1.2
666,348 - Pf1N1B4_572 0.41 +0.3
666,348 - Pf1N1B4_572 0.41 -0.0
666,348 - Pf1N1B4_572 0.41 +0.4
666,378 + Pf1N1B4_572 0.44 -2.0
666,379 - Pf1N1B4_572 0.44 +0.8
666,487 + Pf1N1B4_572 0.54 +1.0

Or see this region's nucleotide sequence