Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5603 and Pf1N1B4_5604 are separated by 260 nucleotides Pf1N1B4_5604 and Pf1N1B4_5605 are separated by 84 nucleotides
Pf1N1B4_5603 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 26,732 to 27,931
_5603
Pf1N1B4_5604 - Permeases of the major facilitator superfamily, at 28,192 to 29,352
_5604
Pf1N1B4_5605 - LysR family regulatory protein, at 29,437 to 30,378
_5605
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.302 kb on + strand, within Pf1N1B4_5603 at 27.302 kb on + strand at 27.302 kb on + strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.638 kb on + strand, within Pf1N1B4_5603 at 27.638 kb on + strand, within Pf1N1B4_5603 at 27.639 kb on - strand, within Pf1N1B4_5603 at 27.639 kb on - strand at 27.761 kb on + strand, within Pf1N1B4_5603 at 27.761 kb on + strand, within Pf1N1B4_5603 at 27.762 kb on - strand, within Pf1N1B4_5603 at 27.919 kb on + strand at 28.019 kb on - strand at 28.019 kb on - strand at 28.019 kb on - strand at 28.019 kb on - strand at 28.019 kb on - strand at 28.019 kb on - strand at 28.019 kb on - strand at 28.019 kb on - strand at 28.165 kb on - strand at 28.365 kb on - strand, within Pf1N1B4_5604 at 28.437 kb on - strand, within Pf1N1B4_5604 at 28.530 kb on + strand, within Pf1N1B4_5604 at 28.559 kb on - strand, within Pf1N1B4_5604 at 28.716 kb on - strand, within Pf1N1B4_5604 at 28.716 kb on - strand at 28.975 kb on + strand, within Pf1N1B4_5604 at 28.976 kb on - strand, within Pf1N1B4_5604 at 29.205 kb on - strand, within Pf1N1B4_5604 at 29.324 kb on - strand at 29.324 kb on - strand at 29.324 kb on - strand at 29.406 kb on - strand at 29.625 kb on - strand, within Pf1N1B4_5605 at 29.902 kb on - strand, within Pf1N1B4_5605
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 27,302 + Pf1N1B4_5603 0.47 -2.0 27,302 + +1.0 27,302 + Pf1N1B4_5603 0.47 +0.5 27,303 - Pf1N1B4_5603 0.48 -1.0 27,303 - Pf1N1B4_5603 0.48 +0.0 27,303 - Pf1N1B4_5603 0.48 +0.1 27,303 - Pf1N1B4_5603 0.48 -1.3 27,638 + Pf1N1B4_5603 0.76 -0.9 27,638 + Pf1N1B4_5603 0.76 +0.6 27,639 - Pf1N1B4_5603 0.76 -1.0 27,639 - +2.0 27,761 + Pf1N1B4_5603 0.86 +1.2 27,761 + Pf1N1B4_5603 0.86 -1.0 27,762 - Pf1N1B4_5603 0.86 +0.5 27,919 + +1.0 28,019 - -0.2 28,019 - -1.1 28,019 - -1.5 28,019 - -1.5 28,019 - -1.1 28,019 - +0.7 28,019 - -0.8 28,019 - +1.9 28,165 - +0.3 28,365 - Pf1N1B4_5604 0.15 +1.0 28,437 - Pf1N1B4_5604 0.21 -0.2 28,530 + Pf1N1B4_5604 0.29 +1.8 28,559 - Pf1N1B4_5604 0.32 +1.5 28,716 - Pf1N1B4_5604 0.45 -0.3 28,716 - +0.5 28,975 + Pf1N1B4_5604 0.67 +1.3 28,976 - Pf1N1B4_5604 0.68 -0.9 29,205 - Pf1N1B4_5604 0.87 -1.1 29,324 - +0.9 29,324 - +1.8 29,324 - -1.9 29,406 - -0.5 29,625 - Pf1N1B4_5605 0.20 -0.4 29,902 - Pf1N1B4_5605 0.49 +0.8
Or see this region's nucleotide sequence