Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5500

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5499 and Pf1N1B4_5500 are separated by 177 nucleotidesPf1N1B4_5500 and Pf1N1B4_5501 are separated by 209 nucleotidesPf1N1B4_5501 and Pf1N1B4_5502 overlap by 35 nucleotides Pf1N1B4_5499 - hypothetical protein, at 247,890 to 249,695 _5499 Pf1N1B4_5500 - hypothetical protein, at 249,873 to 250,862 _5500 Pf1N1B4_5501 - hypothetical protein, at 251,072 to 251,413 _5501 Pf1N1B4_5502 - hypothetical protein, at 251,379 to 252,542 _5502 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1 2 3at 248.900 kb on + strand, within Pf1N1B4_5499at 248.971 kb on + strand, within Pf1N1B4_5499at 248.972 kb on - strand, within Pf1N1B4_5499at 248.972 kb on - strand, within Pf1N1B4_5499at 248.972 kb on - strand, within Pf1N1B4_5499at 249.004 kb on - strandat 249.070 kb on + strand, within Pf1N1B4_5499at 249.070 kb on + strand, within Pf1N1B4_5499at 249.070 kb on + strand, within Pf1N1B4_5499at 249.071 kb on - strand, within Pf1N1B4_5499at 249.232 kb on + strand, within Pf1N1B4_5499at 249.232 kb on + strandat 249.232 kb on + strand, within Pf1N1B4_5499at 249.233 kb on - strand, within Pf1N1B4_5499at 249.233 kb on - strandat 249.246 kb on - strand, within Pf1N1B4_5499at 249.246 kb on - strand, within Pf1N1B4_5499at 249.274 kb on + strand, within Pf1N1B4_5499at 249.450 kb on - strand, within Pf1N1B4_5499at 249.450 kb on - strand, within Pf1N1B4_5499at 249.450 kb on - strand, within Pf1N1B4_5499at 249.560 kb on + strandat 249.571 kb on + strandat 249.571 kb on + strandat 249.571 kb on + strandat 249.572 kb on - strandat 249.572 kb on - strandat 249.623 kb on + strandat 249.627 kb on + strandat 249.627 kb on + strandat 249.627 kb on + strandat 249.628 kb on - strandat 249.682 kb on + strandat 249.683 kb on - strandat 249.683 kb on - strandat 249.742 kb on - strandat 249.840 kb on - strandat 249.840 kb on - strandat 249.880 kb on + strandat 249.880 kb on + strandat 249.880 kb on + strandat 249.880 kb on + strandat 249.880 kb on + strandat 249.880 kb on + strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.882 kb on + strandat 249.883 kb on - strandat 249.883 kb on - strandat 249.883 kb on - strandat 250.144 kb on + strand, within Pf1N1B4_5500at 250.145 kb on - strand, within Pf1N1B4_5500at 250.224 kb on + strand, within Pf1N1B4_5500at 250.224 kb on + strandat 250.224 kb on + strand, within Pf1N1B4_5500at 250.224 kb on + strandat 250.224 kb on + strand, within Pf1N1B4_5500at 250.224 kb on + strand, within Pf1N1B4_5500at 250.225 kb on - strand, within Pf1N1B4_5500at 250.225 kb on - strand, within Pf1N1B4_5500at 250.225 kb on - strand, within Pf1N1B4_5500at 250.225 kb on - strand, within Pf1N1B4_5500at 250.225 kb on - strand, within Pf1N1B4_5500at 250.225 kb on - strand, within Pf1N1B4_5500at 250.225 kb on - strand, within Pf1N1B4_5500at 250.268 kb on - strand, within Pf1N1B4_5500at 250.365 kb on + strand, within Pf1N1B4_5500at 250.365 kb on + strand, within Pf1N1B4_5500at 250.366 kb on - strand, within Pf1N1B4_5500at 250.366 kb on - strand, within Pf1N1B4_5500at 250.366 kb on - strand, within Pf1N1B4_5500at 250.366 kb on - strand, within Pf1N1B4_5500at 250.429 kb on + strand, within Pf1N1B4_5500at 250.429 kb on + strand, within Pf1N1B4_5500at 250.430 kb on - strand, within Pf1N1B4_5500at 250.430 kb on - strand, within Pf1N1B4_5500at 250.430 kb on - strand, within Pf1N1B4_5500at 250.430 kb on - strand, within Pf1N1B4_5500at 250.689 kb on - strand, within Pf1N1B4_5500at 250.689 kb on - strand, within Pf1N1B4_5500at 250.737 kb on - strand, within Pf1N1B4_5500at 250.757 kb on - strandat 250.758 kb on + strand, within Pf1N1B4_5500at 250.758 kb on + strandat 250.758 kb on + strand, within Pf1N1B4_5500at 250.758 kb on + strand, within Pf1N1B4_5500at 250.759 kb on - strand, within Pf1N1B4_5500at 250.759 kb on - strand, within Pf1N1B4_5500at 250.759 kb on - strand, within Pf1N1B4_5500at 250.759 kb on - strand, within Pf1N1B4_5500at 250.759 kb on - strand, within Pf1N1B4_5500at 250.759 kb on - strand, within Pf1N1B4_5500at 250.759 kb on - strand, within Pf1N1B4_5500at 250.759 kb on - strand, within Pf1N1B4_5500at 250.771 kb on - strandat 250.805 kb on - strandat 250.807 kb on + strandat 250.807 kb on + strandat 250.807 kb on + strandat 250.870 kb on + strandat 250.870 kb on + strandat 250.871 kb on - strandat 250.871 kb on - strandat 250.871 kb on - strandat 250.976 kb on + strandat 250.976 kb on + strandat 250.976 kb on + strandat 250.977 kb on - strandat 250.977 kb on - strandat 251.024 kb on + strandat 251.024 kb on + strandat 251.025 kb on - strandat 251.025 kb on - strandat 251.025 kb on - strandat 251.025 kb on - strandat 251.025 kb on - strandat 251.025 kb on - strandat 251.067 kb on + strandat 251.067 kb on + strandat 251.067 kb on + strandat 251.068 kb on - strandat 251.260 kb on + strand, within Pf1N1B4_5501at 251.261 kb on - strand, within Pf1N1B4_5501at 251.261 kb on - strand, within Pf1N1B4_5501at 251.279 kb on + strand, within Pf1N1B4_5501at 251.302 kb on + strand, within Pf1N1B4_5501at 251.302 kb on + strand, within Pf1N1B4_5501at 251.302 kb on + strand, within Pf1N1B4_5501at 251.302 kb on + strand, within Pf1N1B4_5501at 251.303 kb on - strand, within Pf1N1B4_5501at 251.303 kb on - strand, within Pf1N1B4_5501at 251.303 kb on - strand, within Pf1N1B4_5501at 251.411 kb on + strandat 251.411 kb on + strandat 251.412 kb on - strandat 251.517 kb on + strand, within Pf1N1B4_5502at 251.517 kb on + strand, within Pf1N1B4_5502at 251.517 kb on + strand, within Pf1N1B4_5502at 251.517 kb on + strand, within Pf1N1B4_5502at 251.517 kb on + strand, within Pf1N1B4_5502at 251.517 kb on + strand, within Pf1N1B4_5502at 251.518 kb on - strand, within Pf1N1B4_5502at 251.518 kb on - strand, within Pf1N1B4_5502at 251.534 kb on + strand, within Pf1N1B4_5502at 251.590 kb on + strandat 251.739 kb on + strand, within Pf1N1B4_5502at 251.739 kb on + strand, within Pf1N1B4_5502at 251.739 kb on + strand, within Pf1N1B4_5502at 251.740 kb on - strand, within Pf1N1B4_5502at 251.798 kb on + strand, within Pf1N1B4_5502

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
248,900 + Pf1N1B4_5499 0.56 -0.3
248,971 + Pf1N1B4_5499 0.60 -1.0
248,972 - Pf1N1B4_5499 0.60 +0.8
248,972 - Pf1N1B4_5499 0.60 -1.1
248,972 - Pf1N1B4_5499 0.60 -1.6
249,004 - -1.3
249,070 + Pf1N1B4_5499 0.65 +0.0
249,070 + Pf1N1B4_5499 0.65 +1.2
249,070 + Pf1N1B4_5499 0.65 +0.2
249,071 - Pf1N1B4_5499 0.65 +0.0
249,232 + Pf1N1B4_5499 0.74 -1.6
249,232 + +0.0
249,232 + Pf1N1B4_5499 0.74 -0.4
249,233 - Pf1N1B4_5499 0.74 -0.1
249,233 - +2.0
249,246 - Pf1N1B4_5499 0.75 -0.4
249,246 - Pf1N1B4_5499 0.75 -0.4
249,274 + Pf1N1B4_5499 0.77 +0.4
249,450 - Pf1N1B4_5499 0.86 -0.7
249,450 - Pf1N1B4_5499 0.86 +2.4
249,450 - Pf1N1B4_5499 0.86 +0.3
249,560 + +1.3
249,571 + -0.4
249,571 + +1.0
249,571 + +0.0
249,572 - +0.3
249,572 - +1.6
249,623 + +0.1
249,627 + +0.0
249,627 + -0.6
249,627 + -0.8
249,628 - -0.6
249,682 + +0.5
249,683 - +0.0
249,683 - +0.4
249,742 - -0.4
249,840 - -0.1
249,840 - +1.0
249,880 + -0.5
249,880 + +1.0
249,880 + -0.3
249,880 + +0.0
249,880 + +0.9
249,880 + +0.4
249,881 - +1.6
249,881 - +0.8
249,881 - -0.3
249,881 - -1.7
249,881 - -1.0
249,881 - +1.4
249,881 - +3.0
249,881 - +0.7
249,881 - +0.4
249,882 + -1.2
249,883 - +1.0
249,883 - +0.5
249,883 - +1.0
250,144 + Pf1N1B4_5500 0.27 +2.0
250,145 - Pf1N1B4_5500 0.27 -1.0
250,224 + Pf1N1B4_5500 0.35 -0.4
250,224 + +1.0
250,224 + Pf1N1B4_5500 0.35 +2.0
250,224 + -1.0
250,224 + Pf1N1B4_5500 0.35 +0.1
250,224 + Pf1N1B4_5500 0.35 +0.5
250,225 - Pf1N1B4_5500 0.36 -0.6
250,225 - Pf1N1B4_5500 0.36 -0.2
250,225 - Pf1N1B4_5500 0.36 +1.0
250,225 - Pf1N1B4_5500 0.36 -1.0
250,225 - Pf1N1B4_5500 0.36 +1.7
250,225 - Pf1N1B4_5500 0.36 +1.7
250,225 - Pf1N1B4_5500 0.36 +0.2
250,268 - Pf1N1B4_5500 0.40 +1.0
250,365 + Pf1N1B4_5500 0.50 +0.4
250,365 + Pf1N1B4_5500 0.50 +1.4
250,366 - Pf1N1B4_5500 0.50 -0.3
250,366 - Pf1N1B4_5500 0.50 +0.2
250,366 - Pf1N1B4_5500 0.50 -0.6
250,366 - Pf1N1B4_5500 0.50 +0.0
250,429 + Pf1N1B4_5500 0.56 +0.4
250,429 + Pf1N1B4_5500 0.56 -0.7
250,430 - Pf1N1B4_5500 0.56 +2.0
250,430 - Pf1N1B4_5500 0.56 +0.2
250,430 - Pf1N1B4_5500 0.56 +0.0
250,430 - Pf1N1B4_5500 0.56 -0.4
250,689 - Pf1N1B4_5500 0.82 -0.6
250,689 - Pf1N1B4_5500 0.82 +0.1
250,737 - Pf1N1B4_5500 0.87 -1.6
250,757 - -0.6
250,758 + Pf1N1B4_5500 0.89 -1.6
250,758 + -1.0
250,758 + Pf1N1B4_5500 0.89 +0.0
250,758 + Pf1N1B4_5500 0.89 +0.7
250,759 - Pf1N1B4_5500 0.89 +2.2
250,759 - Pf1N1B4_5500 0.89 -2.0
250,759 - Pf1N1B4_5500 0.89 -0.8
250,759 - Pf1N1B4_5500 0.89 +1.2
250,759 - Pf1N1B4_5500 0.89 +0.4
250,759 - Pf1N1B4_5500 0.89 +0.6
250,759 - Pf1N1B4_5500 0.89 -0.7
250,759 - Pf1N1B4_5500 0.89 -0.4
250,771 - -0.3
250,805 - -0.3
250,807 + -0.8
250,807 + +0.4
250,807 + -1.0
250,870 + +1.0
250,870 + +1.2
250,871 - +0.0
250,871 - -1.0
250,871 - +0.8
250,976 + -0.6
250,976 + -2.0
250,976 + -0.6
250,977 - +0.3
250,977 - +0.9
251,024 + +1.6
251,024 + +1.2
251,025 - +0.0
251,025 - +0.0
251,025 - -0.1
251,025 - -1.2
251,025 - -1.0
251,025 - +0.0
251,067 + +1.0
251,067 + -1.0
251,067 + -1.0
251,068 - -1.0
251,260 + Pf1N1B4_5501 0.55 -1.1
251,261 - Pf1N1B4_5501 0.55 +0.4
251,261 - Pf1N1B4_5501 0.55 +0.2
251,279 + Pf1N1B4_5501 0.61 -0.4
251,302 + Pf1N1B4_5501 0.67 +1.0
251,302 + Pf1N1B4_5501 0.67 -1.1
251,302 + Pf1N1B4_5501 0.67 -1.1
251,302 + Pf1N1B4_5501 0.67 -1.3
251,303 - Pf1N1B4_5501 0.68 +0.6
251,303 - Pf1N1B4_5501 0.68 +1.0
251,303 - Pf1N1B4_5501 0.68 -0.3
251,411 + +1.8
251,411 + +0.4
251,412 - -0.8
251,517 + Pf1N1B4_5502 0.12 -0.1
251,517 + Pf1N1B4_5502 0.12 +1.0
251,517 + Pf1N1B4_5502 0.12 +0.0
251,517 + Pf1N1B4_5502 0.12 +0.3
251,517 + Pf1N1B4_5502 0.12 +0.6
251,517 + Pf1N1B4_5502 0.12 +1.2
251,518 - Pf1N1B4_5502 0.12 +0.7
251,518 - Pf1N1B4_5502 0.12 -0.4
251,534 + Pf1N1B4_5502 0.13 -0.3
251,590 + -1.3
251,739 + Pf1N1B4_5502 0.31 -2.1
251,739 + Pf1N1B4_5502 0.31 +0.0
251,739 + Pf1N1B4_5502 0.31 +1.2
251,740 - Pf1N1B4_5502 0.31 -1.0
251,798 + Pf1N1B4_5502 0.36 -0.1

Or see this region's nucleotide sequence