Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5495

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5495 and Pf1N1B4_5496 are separated by 68 nucleotides Pf1N1B4_5495 - Cyclic AMP receptor protein, at 243,236 to 243,814 _5495 Pf1N1B4_5496 - hypothetical protein, at 243,883 to 244,107 _5496 Position (kb) 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 242.278 kb on + strandat 242.329 kb on + strandat 242.329 kb on + strandat 242.506 kb on + strandat 242.520 kb on + strandat 242.520 kb on + strandat 242.520 kb on + strandat 242.521 kb on - strandat 242.521 kb on - strandat 242.521 kb on - strandat 242.521 kb on - strandat 242.521 kb on - strandat 242.521 kb on - strandat 242.521 kb on - strandat 242.622 kb on - strandat 242.790 kb on + strandat 242.790 kb on + strandat 242.791 kb on - strandat 242.817 kb on + strandat 242.818 kb on - strandat 242.818 kb on - strandat 242.818 kb on - strandat 242.818 kb on - strandat 242.831 kb on + strandat 242.831 kb on + strandat 242.831 kb on + strandat 242.832 kb on - strandat 242.870 kb on + strandat 242.871 kb on - strandat 242.871 kb on - strandat 243.050 kb on - strandat 243.064 kb on + strandat 243.065 kb on - strandat 243.065 kb on - strandat 243.081 kb on + strandat 243.081 kb on + strandat 243.081 kb on + strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.082 kb on - strandat 243.155 kb on - strandat 243.292 kb on + strandat 243.293 kb on - strandat 243.293 kb on - strandat 243.293 kb on - strandat 243.296 kb on + strand, within Pf1N1B4_5495at 243.296 kb on + strand, within Pf1N1B4_5495at 243.296 kb on + strand, within Pf1N1B4_5495at 243.296 kb on + strand, within Pf1N1B4_5495at 243.296 kb on + strand, within Pf1N1B4_5495at 243.297 kb on - strand, within Pf1N1B4_5495at 243.297 kb on - strand, within Pf1N1B4_5495at 243.297 kb on - strand, within Pf1N1B4_5495at 243.351 kb on + strand, within Pf1N1B4_5495at 243.351 kb on + strand, within Pf1N1B4_5495at 243.351 kb on + strand, within Pf1N1B4_5495at 243.351 kb on + strand, within Pf1N1B4_5495at 243.352 kb on - strand, within Pf1N1B4_5495at 243.352 kb on - strand, within Pf1N1B4_5495at 243.360 kb on + strand, within Pf1N1B4_5495at 243.361 kb on - strand, within Pf1N1B4_5495at 243.369 kb on + strandat 243.370 kb on - strand, within Pf1N1B4_5495at 243.475 kb on - strand, within Pf1N1B4_5495at 243.583 kb on + strand, within Pf1N1B4_5495at 243.584 kb on - strand, within Pf1N1B4_5495at 243.584 kb on - strand, within Pf1N1B4_5495at 243.719 kb on - strand, within Pf1N1B4_5495at 243.790 kb on + strandat 243.791 kb on - strandat 243.791 kb on - strandat 243.834 kb on + strandat 243.834 kb on + strandat 243.835 kb on - strandat 243.835 kb on - strandat 243.922 kb on + strand, within Pf1N1B4_5496at 243.922 kb on + strand, within Pf1N1B4_5496at 243.922 kb on + strand, within Pf1N1B4_5496at 243.923 kb on - strand, within Pf1N1B4_5496at 243.923 kb on - strand, within Pf1N1B4_5496at 243.923 kb on - strand, within Pf1N1B4_5496at 244.000 kb on + strand, within Pf1N1B4_5496at 244.001 kb on - strand, within Pf1N1B4_5496at 244.106 kb on - strandat 244.129 kb on - strandat 244.129 kb on - strandat 244.154 kb on + strandat 244.155 kb on - strandat 244.155 kb on - strandat 244.155 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.183 kb on - strandat 244.300 kb on + strandat 244.431 kb on - strandat 244.431 kb on - strandat 244.445 kb on - strandat 244.571 kb on - strandat 244.571 kb on - strandat 244.571 kb on - strandat 244.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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242,278 + +0.2
242,329 + +0.2
242,329 + +1.8
242,506 + -0.7
242,520 + +0.3
242,520 + -0.8
242,520 + +0.0
242,521 - +1.6
242,521 - +0.0
242,521 - -0.4
242,521 - -0.4
242,521 - +0.0
242,521 - +0.3
242,521 - +0.0
242,622 - -0.3
242,790 + +1.4
242,790 + -0.3
242,791 - +1.4
242,817 + -0.3
242,818 - +0.1
242,818 - +0.0
242,818 - +0.6
242,818 - -0.3
242,831 + +1.0
242,831 + -1.3
242,831 + +1.0
242,832 - -0.4
242,870 + +0.2
242,871 - -1.6
242,871 - +2.6
243,050 - +1.0
243,064 + -0.0
243,065 - +0.0
243,065 - -0.1
243,081 + +0.6
243,081 + +1.0
243,081 + -0.6
243,082 - +0.6
243,082 - +0.4
243,082 - +0.5
243,082 - +0.2
243,082 - -0.8
243,082 - +2.0
243,155 - +0.2
243,292 + +0.4
243,293 - -0.4
243,293 - -1.0
243,293 - -1.6
243,296 + Pf1N1B4_5495 0.10 -1.8
243,296 + Pf1N1B4_5495 0.10 -2.1
243,296 + Pf1N1B4_5495 0.10 -1.4
243,296 + Pf1N1B4_5495 0.10 +1.0
243,296 + Pf1N1B4_5495 0.10 +0.4
243,297 - Pf1N1B4_5495 0.11 -0.6
243,297 - Pf1N1B4_5495 0.11 -1.3
243,297 - Pf1N1B4_5495 0.11 +1.0
243,351 + Pf1N1B4_5495 0.20 +0.0
243,351 + Pf1N1B4_5495 0.20 +0.0
243,351 + Pf1N1B4_5495 0.20 -1.2
243,351 + Pf1N1B4_5495 0.20 -0.6
243,352 - Pf1N1B4_5495 0.20 -0.4
243,352 - Pf1N1B4_5495 0.20 +0.4
243,360 + Pf1N1B4_5495 0.21 +0.3
243,361 - Pf1N1B4_5495 0.22 -1.1
243,369 + +0.4
243,370 - Pf1N1B4_5495 0.23 +1.2
243,475 - Pf1N1B4_5495 0.41 -0.2
243,583 + Pf1N1B4_5495 0.60 +0.1
243,584 - Pf1N1B4_5495 0.60 -1.0
243,584 - Pf1N1B4_5495 0.60 -0.8
243,719 - Pf1N1B4_5495 0.83 +1.6
243,790 + -0.3
243,791 - -0.1
243,791 - +0.0
243,834 + -0.2
243,834 + +0.6
243,835 - -0.4
243,835 - +1.0
243,922 + Pf1N1B4_5496 0.17 +1.0
243,922 + Pf1N1B4_5496 0.17 +0.2
243,922 + Pf1N1B4_5496 0.17 -0.6
243,923 - Pf1N1B4_5496 0.18 +1.3
243,923 - Pf1N1B4_5496 0.18 -1.0
243,923 - Pf1N1B4_5496 0.18 +1.8
244,000 + Pf1N1B4_5496 0.52 -2.0
244,001 - Pf1N1B4_5496 0.52 +0.2
244,106 - -2.9
244,129 - +1.0
244,129 - +0.0
244,154 + +0.4
244,155 - +0.0
244,155 - -1.1
244,155 - -0.7
244,183 - -2.1
244,183 - +0.4
244,183 - -1.4
244,183 - -2.3
244,183 - -0.4
244,183 - -2.0
244,300 + +0.0
244,431 - -0.3
244,431 - +0.0
244,445 - -0.8
244,571 - -1.6
244,571 - -2.6
244,571 - -0.4
244,571 - +2.3

Or see this region's nucleotide sequence