Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5347 and Pf1N1B4_5348 are separated by 101 nucleotides Pf1N1B4_5348 and Pf1N1B4_5349 are separated by 741 nucleotides Pf1N1B4_5349 and Pf1N1B4_5350 are separated by 316 nucleotides
Pf1N1B4_5347 - hypothetical protein, at 88,005 to 88,352
_5347
Pf1N1B4_5348 - hypothetical protein, at 88,454 to 88,576
_5348
Pf1N1B4_5349 - hypothetical protein, at 89,318 to 89,953
_5349
Pf1N1B4_5350 - hypothetical protein, at 90,270 to 91,034
_5350
Position (kb) 89
90 Strain fitness (log2 ratio) -2
-1
0
1
2 at 88.495 kb on - strand, within Pf1N1B4_5348 at 88.495 kb on - strand, within Pf1N1B4_5348 at 88.495 kb on - strand, within Pf1N1B4_5348 at 88.560 kb on - strand at 88.560 kb on - strand, within Pf1N1B4_5348 at 88.642 kb on - strand at 88.671 kb on + strand at 88.672 kb on - strand at 88.793 kb on - strand at 88.803 kb on + strand at 88.804 kb on - strand at 88.859 kb on - strand at 88.874 kb on + strand at 88.874 kb on + strand at 88.875 kb on - strand at 88.875 kb on - strand at 88.893 kb on + strand at 88.970 kb on + strand at 88.970 kb on + strand at 88.970 kb on + strand at 88.970 kb on + strand at 88.971 kb on - strand at 88.971 kb on - strand at 88.971 kb on - strand at 88.976 kb on + strand at 88.976 kb on + strand at 88.976 kb on + strand at 88.976 kb on + strand at 88.977 kb on - strand at 89.028 kb on - strand at 89.028 kb on - strand at 89.270 kb on + strand at 89.270 kb on + strand at 89.271 kb on - strand at 89.271 kb on - strand at 89.300 kb on - strand at 89.390 kb on - strand, within Pf1N1B4_5349 at 89.390 kb on - strand, within Pf1N1B4_5349 at 89.390 kb on - strand at 89.506 kb on - strand, within Pf1N1B4_5349 at 89.506 kb on - strand, within Pf1N1B4_5349 at 89.534 kb on + strand, within Pf1N1B4_5349 at 89.637 kb on + strand, within Pf1N1B4_5349 at 89.637 kb on + strand, within Pf1N1B4_5349 at 89.638 kb on - strand, within Pf1N1B4_5349 at 89.679 kb on + strand at 89.680 kb on - strand, within Pf1N1B4_5349 at 89.908 kb on + strand at 89.909 kb on - strand at 89.909 kb on - strand at 90.148 kb on - strand at 90.197 kb on + strand at 90.197 kb on + strand at 90.197 kb on + strand at 90.222 kb on + strand at 90.223 kb on - strand at 90.242 kb on + strand at 90.457 kb on + strand, within Pf1N1B4_5350 at 90.457 kb on + strand, within Pf1N1B4_5350 at 90.458 kb on - strand, within Pf1N1B4_5350 at 90.458 kb on - strand, within Pf1N1B4_5350 at 90.677 kb on - strand, within Pf1N1B4_5350 at 90.730 kb on - strand, within Pf1N1B4_5350 at 90.868 kb on + strand, within Pf1N1B4_5350 at 90.869 kb on - strand, within Pf1N1B4_5350 at 90.916 kb on + strand, within Pf1N1B4_5350 at 90.916 kb on + strand, within Pf1N1B4_5350 at 90.917 kb on - strand, within Pf1N1B4_5350
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 88,495 - Pf1N1B4_5348 0.33 +0.2 88,495 - Pf1N1B4_5348 0.33 +1.3 88,495 - Pf1N1B4_5348 0.33 +1.0 88,560 - +1.8 88,560 - Pf1N1B4_5348 0.86 +0.3 88,642 - +1.0 88,671 + +2.0 88,672 - +1.0 88,793 - -0.4 88,803 + -0.3 88,804 - -0.4 88,859 - -1.3 88,874 + +1.0 88,874 + -0.4 88,875 - -0.2 88,875 - +1.6 88,893 + +0.6 88,970 + +1.0 88,970 + +0.0 88,970 + -1.3 88,970 + +1.0 88,971 - +0.7 88,971 - +2.0 88,971 - -1.5 88,976 + +0.7 88,976 + +0.6 88,976 + -0.8 88,976 + -0.4 88,977 - -0.6 89,028 - -1.0 89,028 - -0.4 89,270 + +0.4 89,270 + +2.2 89,271 - +1.3 89,271 - +0.3 89,300 - -0.2 89,390 - Pf1N1B4_5349 0.11 -0.6 89,390 - Pf1N1B4_5349 0.11 -0.5 89,390 - -0.8 89,506 - Pf1N1B4_5349 0.30 +0.3 89,506 - Pf1N1B4_5349 0.30 -1.6 89,534 + Pf1N1B4_5349 0.34 -1.6 89,637 + Pf1N1B4_5349 0.50 +0.0 89,637 + Pf1N1B4_5349 0.50 -1.2 89,638 - Pf1N1B4_5349 0.50 -0.4 89,679 + +1.0 89,680 - Pf1N1B4_5349 0.57 +0.4 89,908 + -0.1 89,909 - +0.3 89,909 - +0.0 90,148 - -0.4 90,197 + +0.4 90,197 + +0.0 90,197 + +0.0 90,222 + -0.3 90,223 - +1.0 90,242 + +0.0 90,457 + Pf1N1B4_5350 0.24 -0.4 90,457 + Pf1N1B4_5350 0.24 -1.6 90,458 - Pf1N1B4_5350 0.25 -0.3 90,458 - Pf1N1B4_5350 0.25 -0.4 90,677 - Pf1N1B4_5350 0.53 +0.5 90,730 - Pf1N1B4_5350 0.60 +0.0 90,868 + Pf1N1B4_5350 0.78 -0.4 90,869 - Pf1N1B4_5350 0.78 +0.0 90,916 + Pf1N1B4_5350 0.84 -0.6 90,916 + Pf1N1B4_5350 0.84 -2.0 90,917 - Pf1N1B4_5350 0.85 +0.3
Or see this region's nucleotide sequence