Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5287 and Pf1N1B4_5288 are separated by 501 nucleotides
Pf1N1B4_5287 - hypothetical protein, at 41,110 to 41,250
_5287
Pf1N1B4_5288 - hypothetical protein, at 41,752 to 42,228
_5288
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.895 kb on + strand at 40.895 kb on + strand at 40.920 kb on + strand at 40.923 kb on + strand at 41.088 kb on - strand at 41.166 kb on + strand, within Pf1N1B4_5287 at 41.183 kb on + strand, within Pf1N1B4_5287 at 41.283 kb on + strand at 41.283 kb on + strand at 41.283 kb on + strand at 41.284 kb on - strand at 41.429 kb on + strand at 41.429 kb on + strand at 41.429 kb on + strand at 41.430 kb on - strand at 41.483 kb on + strand at 41.596 kb on + strand at 41.597 kb on - strand at 41.597 kb on - strand at 41.659 kb on - strand at 41.782 kb on + strand at 41.783 kb on - strand at 41.837 kb on + strand, within Pf1N1B4_5288 at 41.838 kb on - strand, within Pf1N1B4_5288 at 42.039 kb on + strand, within Pf1N1B4_5288 at 42.057 kb on + strand, within Pf1N1B4_5288 at 42.152 kb on + strand, within Pf1N1B4_5288 at 42.152 kb on + strand, within Pf1N1B4_5288 at 42.152 kb on + strand, within Pf1N1B4_5288 at 42.152 kb on + strand, within Pf1N1B4_5288 at 42.153 kb on - strand, within Pf1N1B4_5288 at 42.226 kb on + strand at 42.226 kb on + strand at 42.227 kb on - strand at 42.245 kb on + strand at 42.246 kb on - strand at 42.246 kb on - strand at 42.246 kb on - strand at 42.287 kb on + strand at 42.287 kb on + strand at 42.288 kb on - strand at 42.290 kb on - strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.309 kb on - strand at 42.309 kb on - strand at 42.309 kb on - strand at 42.310 kb on + strand at 42.311 kb on - strand at 42.352 kb on + strand at 42.353 kb on - strand at 42.375 kb on + strand at 42.375 kb on + strand at 42.375 kb on + strand at 42.375 kb on + strand at 42.375 kb on + strand at 42.376 kb on - strand at 42.376 kb on - strand at 42.380 kb on - strand at 42.380 kb on - strand at 42.410 kb on + strand at 42.410 kb on + strand at 42.410 kb on + strand at 42.410 kb on + strand at 42.411 kb on - strand at 42.411 kb on - strand at 42.411 kb on - strand at 42.421 kb on + strand at 42.463 kb on + strand at 42.464 kb on - strand at 42.556 kb on + strand at 42.557 kb on - strand at 42.586 kb on + strand at 42.587 kb on - strand at 42.587 kb on - strand at 42.590 kb on + strand at 42.590 kb on + strand at 42.590 kb on + strand at 42.590 kb on + strand at 42.591 kb on - strand at 42.591 kb on - strand at 42.591 kb on - strand at 42.662 kb on + strand at 42.662 kb on + strand at 42.663 kb on - strand at 42.747 kb on + strand at 42.748 kb on - strand at 42.784 kb on + strand at 42.814 kb on + strand at 42.849 kb on + strand at 42.940 kb on + strand at 42.940 kb on + strand at 43.041 kb on - strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.043 kb on - strand at 43.043 kb on - strand at 43.043 kb on - strand at 43.043 kb on - strand at 43.099 kb on - strand at 43.099 kb on - strand at 43.104 kb on - strand at 43.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 40,895 + -0.6 40,895 + -0.4 40,920 + +0.3 40,923 + +0.6 41,088 - +0.6 41,166 + Pf1N1B4_5287 0.40 +0.3 41,183 + Pf1N1B4_5287 0.52 -1.2 41,283 + +0.2 41,283 + +0.3 41,283 + -0.8 41,284 - -0.6 41,429 + +0.0 41,429 + -1.2 41,429 + +0.8 41,430 - +0.3 41,483 + +0.4 41,596 + +2.0 41,597 - -2.3 41,597 - +0.8 41,659 - +1.0 41,782 + +2.0 41,783 - +0.8 41,837 + Pf1N1B4_5288 0.18 +1.0 41,838 - Pf1N1B4_5288 0.18 +0.4 42,039 + Pf1N1B4_5288 0.60 +0.0 42,057 + Pf1N1B4_5288 0.64 +1.0 42,152 + Pf1N1B4_5288 0.84 -0.7 42,152 + Pf1N1B4_5288 0.84 -1.6 42,152 + Pf1N1B4_5288 0.84 +2.0 42,152 + Pf1N1B4_5288 0.84 +1.0 42,153 - Pf1N1B4_5288 0.84 +0.7 42,226 + +0.1 42,226 + -0.4 42,227 - -1.3 42,245 + -2.3 42,246 - +0.3 42,246 - -0.7 42,246 - +2.0 42,287 + -0.2 42,287 + +1.0 42,288 - +0.6 42,290 - -0.3 42,308 + -1.4 42,308 + +0.6 42,308 + +1.6 42,308 + +0.0 42,308 + -0.2 42,308 + +0.4 42,308 + +1.0 42,308 + -1.5 42,308 + -0.6 42,308 + +0.7 42,308 + +0.0 42,309 - +1.8 42,309 - -2.0 42,309 - +0.0 42,310 + +0.8 42,311 - -1.6 42,352 + +1.0 42,353 - +0.3 42,375 + +0.1 42,375 + +2.3 42,375 + +1.0 42,375 + +1.0 42,375 + -0.6 42,376 - -0.4 42,376 - -0.2 42,380 - +0.0 42,380 - +0.8 42,410 + +2.0 42,410 + -1.3 42,410 + +1.8 42,410 + +0.7 42,411 - +0.0 42,411 - +0.1 42,411 - -0.7 42,421 + -0.4 42,463 + +0.0 42,464 - -1.3 42,556 + -1.2 42,557 - +0.3 42,586 + +0.7 42,587 - +0.3 42,587 - +2.0 42,590 + -1.8 42,590 + +0.0 42,590 + -1.3 42,590 + +0.4 42,591 - -0.2 42,591 - +0.1 42,591 - -0.7 42,662 + -0.8 42,662 + +0.3 42,663 - -0.2 42,747 + +0.4 42,748 - +0.0 42,784 + +0.0 42,814 + +0.0 42,849 + +1.3 42,940 + +2.0 42,940 + -1.0 43,041 - -1.0 43,042 + +2.4 43,042 + +0.4 43,042 + -1.3 43,042 + +0.0 43,042 + +1.3 43,042 + -0.6 43,043 - -0.6 43,043 - +0.1 43,043 - -0.1 43,043 - -1.0 43,099 - -0.3 43,099 - +1.2 43,104 - -0.8 43,155 - +0.4
Or see this region's nucleotide sequence