Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_514 and Pf1N1B4_515 are separated by 256 nucleotides Pf1N1B4_515 and Pf1N1B4_516 overlap by 1 nucleotides
Pf1N1B4_514 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 605,492 to 606,226
_514
Pf1N1B4_515 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 606,483 to 607,241
_515
Pf1N1B4_516 - Sensor histidine kinase, at 607,241 to 608,293
_516
Position (kb) 606
607
608 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 605.483 kb on + strand at 605.493 kb on + strand at 606.294 kb on + strand at 606.294 kb on + strand at 606.295 kb on - strand at 606.415 kb on + strand at 606.416 kb on - strand at 606.441 kb on + strand at 606.441 kb on + strand at 606.441 kb on + strand at 606.442 kb on - strand at 606.461 kb on + strand at 606.461 kb on + strand at 606.461 kb on + strand at 606.536 kb on + strand at 606.604 kb on - strand, within Pf1N1B4_515 at 606.621 kb on - strand, within Pf1N1B4_515 at 606.837 kb on + strand, within Pf1N1B4_515 at 606.837 kb on + strand, within Pf1N1B4_515 at 606.837 kb on + strand, within Pf1N1B4_515 at 606.837 kb on + strand, within Pf1N1B4_515 at 606.838 kb on - strand, within Pf1N1B4_515 at 606.838 kb on - strand, within Pf1N1B4_515 at 606.838 kb on - strand at 606.838 kb on - strand, within Pf1N1B4_515 at 606.838 kb on - strand, within Pf1N1B4_515 at 606.955 kb on + strand at 607.213 kb on - strand at 607.213 kb on - strand at 607.258 kb on + strand at 607.302 kb on + strand at 607.302 kb on + strand at 607.303 kb on - strand at 607.832 kb on + strand, within Pf1N1B4_516 at 607.832 kb on + strand, within Pf1N1B4_516 at 607.832 kb on + strand at 607.832 kb on + strand, within Pf1N1B4_516 at 607.833 kb on - strand at 607.833 kb on - strand, within Pf1N1B4_516 at 608.158 kb on + strand, within Pf1N1B4_516 at 608.158 kb on + strand, within Pf1N1B4_516
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 605,483 + +1.2 605,493 + -0.2 606,294 + -0.1 606,294 + +0.9 606,295 - +0.2 606,415 + +0.6 606,416 - -0.2 606,441 + -2.2 606,441 + +0.0 606,441 + -0.1 606,442 - +1.1 606,461 + +0.9 606,461 + -0.1 606,461 + +1.7 606,536 + -2.2 606,604 - Pf1N1B4_515 0.16 -1.1 606,621 - Pf1N1B4_515 0.18 +0.9 606,837 + Pf1N1B4_515 0.47 -1.1 606,837 + Pf1N1B4_515 0.47 -1.0 606,837 + Pf1N1B4_515 0.47 -0.4 606,837 + Pf1N1B4_515 0.47 -1.9 606,838 - Pf1N1B4_515 0.47 +0.2 606,838 - Pf1N1B4_515 0.47 +0.2 606,838 - +2.9 606,838 - Pf1N1B4_515 0.47 +0.6 606,838 - Pf1N1B4_515 0.47 -1.1 606,955 + -0.1 607,213 - +0.2 607,213 - -0.4 607,258 + +0.9 607,302 + -1.1 607,302 + +0.9 607,303 - -0.6 607,832 + Pf1N1B4_516 0.56 +0.7 607,832 + Pf1N1B4_516 0.56 +1.1 607,832 + -0.7 607,832 + Pf1N1B4_516 0.56 +0.3 607,833 - -0.1 607,833 - Pf1N1B4_516 0.56 -0.7 608,158 + Pf1N1B4_516 0.87 +0.1 608,158 + Pf1N1B4_516 0.87 +0.7
Or see this region's nucleotide sequence