Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5149

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5149 and Pf1N1B4_5150 are separated by 2 nucleotides Pf1N1B4_5149 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 5,732,960 to 5,733,703 _5149 Pf1N1B4_5150 - FIG00933687: hypothetical protein, at 5,733,706 to 5,736,129 _5150 Position (kb) 5732 5733 5734Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5731.991 kb on + strandat 5731.992 kb on - strandat 5732.181 kb on + strandat 5732.193 kb on + strandat 5732.221 kb on + strandat 5732.221 kb on + strandat 5732.221 kb on + strandat 5732.272 kb on + strandat 5732.272 kb on + strandat 5732.336 kb on + strandat 5732.336 kb on + strandat 5732.338 kb on + strandat 5732.338 kb on + strandat 5732.338 kb on + strandat 5732.339 kb on - strandat 5732.348 kb on - strandat 5732.504 kb on - strandat 5732.504 kb on - strandat 5732.504 kb on - strandat 5732.504 kb on - strandat 5732.504 kb on - strandat 5732.558 kb on - strandat 5732.634 kb on - strandat 5732.860 kb on + strandat 5732.886 kb on - strandat 5733.172 kb on + strand, within Pf1N1B4_5149at 5733.172 kb on + strand, within Pf1N1B4_5149at 5733.173 kb on - strand, within Pf1N1B4_5149at 5733.173 kb on - strand, within Pf1N1B4_5149at 5733.173 kb on - strand, within Pf1N1B4_5149at 5733.173 kb on - strandat 5733.173 kb on - strand, within Pf1N1B4_5149at 5733.257 kb on + strand, within Pf1N1B4_5149at 5733.257 kb on + strand, within Pf1N1B4_5149at 5733.257 kb on + strand, within Pf1N1B4_5149at 5733.258 kb on - strand, within Pf1N1B4_5149at 5733.258 kb on - strand, within Pf1N1B4_5149at 5733.497 kb on + strand, within Pf1N1B4_5149at 5733.498 kb on - strand, within Pf1N1B4_5149at 5733.579 kb on + strand, within Pf1N1B4_5149at 5734.036 kb on + strand, within Pf1N1B4_5150at 5734.036 kb on + strand, within Pf1N1B4_5150at 5734.037 kb on - strand, within Pf1N1B4_5150at 5734.037 kb on - strand, within Pf1N1B4_5150at 5734.037 kb on - strand, within Pf1N1B4_5150at 5734.124 kb on - strand, within Pf1N1B4_5150at 5734.360 kb on + strandat 5734.694 kb on - strand, within Pf1N1B4_5150

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,731,991 + -1.4
5,731,992 - +0.4
5,732,181 + +0.4
5,732,193 + +2.2
5,732,221 + -1.8
5,732,221 + +0.7
5,732,221 + -1.2
5,732,272 + +2.0
5,732,272 + -0.8
5,732,336 + +0.1
5,732,336 + -0.3
5,732,338 + +0.2
5,732,338 + +1.2
5,732,338 + -0.1
5,732,339 - -0.6
5,732,348 - +0.4
5,732,504 - -0.4
5,732,504 - +0.4
5,732,504 - -2.9
5,732,504 - -2.2
5,732,504 - +1.4
5,732,558 - +0.0
5,732,634 - -0.3
5,732,860 + -0.8
5,732,886 - +0.1
5,733,172 + Pf1N1B4_5149 0.28 -0.6
5,733,172 + Pf1N1B4_5149 0.28 -1.2
5,733,173 - Pf1N1B4_5149 0.29 -0.9
5,733,173 - Pf1N1B4_5149 0.29 -1.0
5,733,173 - Pf1N1B4_5149 0.29 +1.4
5,733,173 - +1.4
5,733,173 - Pf1N1B4_5149 0.29 -1.0
5,733,257 + Pf1N1B4_5149 0.40 -0.6
5,733,257 + Pf1N1B4_5149 0.40 -0.6
5,733,257 + Pf1N1B4_5149 0.40 +1.2
5,733,258 - Pf1N1B4_5149 0.40 -1.0
5,733,258 - Pf1N1B4_5149 0.40 -0.6
5,733,497 + Pf1N1B4_5149 0.72 -1.0
5,733,498 - Pf1N1B4_5149 0.72 +0.8
5,733,579 + Pf1N1B4_5149 0.83 -1.9
5,734,036 + Pf1N1B4_5150 0.14 +0.1
5,734,036 + Pf1N1B4_5150 0.14 +0.0
5,734,037 - Pf1N1B4_5150 0.14 +0.2
5,734,037 - Pf1N1B4_5150 0.14 -0.3
5,734,037 - Pf1N1B4_5150 0.14 +0.3
5,734,124 - Pf1N1B4_5150 0.17 +0.8
5,734,360 + -0.9
5,734,694 - Pf1N1B4_5150 0.41 -0.4

Or see this region's nucleotide sequence