Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5105 and Pf1N1B4_5106 are separated by 33 nucleotides Pf1N1B4_5106 and Pf1N1B4_5107 are separated by 231 nucleotides
Pf1N1B4_5105 - Peptide ABC transporter, ATP-binding protein, at 5,658,539 to 5,659,510
_5105
Pf1N1B4_5106 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein, at 5,659,544 to 5,661,058
_5106
Pf1N1B4_5107 - Putative collagenase, at 5,661,290 to 5,663,290
_5107
Position (kb) 5659
5660
5661
5662 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5658.597 kb on + strand at 5659.223 kb on + strand at 5659.224 kb on - strand, within Pf1N1B4_5105 at 5659.224 kb on - strand, within Pf1N1B4_5105 at 5659.224 kb on - strand, within Pf1N1B4_5105 at 5659.224 kb on - strand, within Pf1N1B4_5105 at 5659.509 kb on - strand at 5659.520 kb on + strand at 5659.809 kb on - strand, within Pf1N1B4_5106 at 5660.075 kb on + strand, within Pf1N1B4_5106 at 5660.075 kb on + strand at 5660.397 kb on + strand, within Pf1N1B4_5106 at 5660.474 kb on + strand, within Pf1N1B4_5106 at 5660.480 kb on + strand at 5660.481 kb on - strand, within Pf1N1B4_5106 at 5660.481 kb on - strand, within Pf1N1B4_5106 at 5660.594 kb on + strand at 5660.733 kb on - strand at 5660.751 kb on - strand, within Pf1N1B4_5106 at 5660.822 kb on + strand, within Pf1N1B4_5106 at 5660.822 kb on + strand, within Pf1N1B4_5106 at 5660.822 kb on + strand, within Pf1N1B4_5106 at 5660.823 kb on - strand, within Pf1N1B4_5106 at 5660.823 kb on - strand at 5660.823 kb on - strand, within Pf1N1B4_5106 at 5660.823 kb on - strand, within Pf1N1B4_5106 at 5660.835 kb on - strand, within Pf1N1B4_5106 at 5660.909 kb on + strand at 5660.909 kb on + strand at 5660.910 kb on - strand at 5660.910 kb on - strand at 5660.972 kb on + strand at 5660.973 kb on - strand at 5660.973 kb on - strand at 5660.973 kb on - strand at 5661.384 kb on - strand at 5661.820 kb on + strand, within Pf1N1B4_5107
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,658,597 + +0.7 5,659,223 + +0.1 5,659,224 - Pf1N1B4_5105 0.70 -0.5 5,659,224 - Pf1N1B4_5105 0.70 +0.8 5,659,224 - Pf1N1B4_5105 0.70 +0.8 5,659,224 - Pf1N1B4_5105 0.70 -0.2 5,659,509 - +0.1 5,659,520 + -1.9 5,659,809 - Pf1N1B4_5106 0.17 -0.9 5,660,075 + Pf1N1B4_5106 0.35 -0.6 5,660,075 + +0.4 5,660,397 + Pf1N1B4_5106 0.56 +0.3 5,660,474 + Pf1N1B4_5106 0.61 -1.0 5,660,480 + +2.4 5,660,481 - Pf1N1B4_5106 0.62 -2.0 5,660,481 - Pf1N1B4_5106 0.62 -0.6 5,660,594 + +0.8 5,660,733 - -0.6 5,660,751 - Pf1N1B4_5106 0.80 +0.2 5,660,822 + Pf1N1B4_5106 0.84 +0.1 5,660,822 + Pf1N1B4_5106 0.84 -0.2 5,660,822 + Pf1N1B4_5106 0.84 -2.2 5,660,823 - Pf1N1B4_5106 0.84 -1.2 5,660,823 - -1.6 5,660,823 - Pf1N1B4_5106 0.84 -1.1 5,660,823 - Pf1N1B4_5106 0.84 -0.9 5,660,835 - Pf1N1B4_5106 0.85 -0.6 5,660,909 + -0.2 5,660,909 + -1.6 5,660,910 - +0.4 5,660,910 - -0.2 5,660,972 + +1.4 5,660,973 - +2.7 5,660,973 - -0.6 5,660,973 - +0.6 5,661,384 - -0.9 5,661,820 + Pf1N1B4_5107 0.26 -0.9
Or see this region's nucleotide sequence