Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4997

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4996 and Pf1N1B4_4997 are separated by 40 nucleotidesPf1N1B4_4997 and Pf1N1B4_4998 are separated by 340 nucleotides Pf1N1B4_4996 - Aspartate aminotransferase (EC 2.6.1.1), at 5,543,411 to 5,544,598 _4996 Pf1N1B4_4997 - Methyl-accepting chemotaxis protein, at 5,544,639 to 5,546,264 _4997 Pf1N1B4_4998 - Glycerate kinase (EC 2.7.1.31), at 5,546,605 to 5,547,747 _4998 Position (kb) 5544 5545 5546 5547Strain fitness (log2 ratio) -2 -1 0 1 2at 5543.759 kb on + strand, within Pf1N1B4_4996at 5543.979 kb on + strand, within Pf1N1B4_4996at 5544.213 kb on + strand, within Pf1N1B4_4996at 5544.214 kb on - strand, within Pf1N1B4_4996at 5544.214 kb on - strand, within Pf1N1B4_4996at 5544.214 kb on - strand, within Pf1N1B4_4996at 5544.214 kb on - strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.222 kb on + strand, within Pf1N1B4_4996at 5544.223 kb on - strand, within Pf1N1B4_4996at 5544.223 kb on - strand, within Pf1N1B4_4996at 5544.223 kb on - strand, within Pf1N1B4_4996at 5544.223 kb on - strand, within Pf1N1B4_4996at 5544.283 kb on - strand, within Pf1N1B4_4996at 5544.370 kb on + strand, within Pf1N1B4_4996at 5544.371 kb on - strand, within Pf1N1B4_4996at 5544.371 kb on - strandat 5544.396 kb on - strand, within Pf1N1B4_4996at 5544.600 kb on + strandat 5544.600 kb on + strandat 5544.600 kb on + strandat 5544.636 kb on - strandat 5545.887 kb on + strand, within Pf1N1B4_4997at 5545.888 kb on - strand, within Pf1N1B4_4997at 5545.891 kb on + strand, within Pf1N1B4_4997at 5545.891 kb on + strand, within Pf1N1B4_4997at 5545.891 kb on + strand, within Pf1N1B4_4997at 5545.891 kb on + strand, within Pf1N1B4_4997at 5545.891 kb on + strand, within Pf1N1B4_4997at 5545.891 kb on + strand, within Pf1N1B4_4997at 5545.891 kb on + strand, within Pf1N1B4_4997at 5545.891 kb on + strandat 5545.891 kb on + strand, within Pf1N1B4_4997at 5545.892 kb on - strand, within Pf1N1B4_4997at 5545.892 kb on - strand, within Pf1N1B4_4997at 5546.049 kb on + strand, within Pf1N1B4_4997at 5546.208 kb on + strandat 5546.252 kb on + strandat 5546.253 kb on - strandat 5546.264 kb on + strandat 5546.264 kb on + strandat 5546.264 kb on + strandat 5546.264 kb on + strandat 5546.264 kb on + strandat 5546.265 kb on - strandat 5546.265 kb on - strandat 5546.333 kb on + strandat 5546.359 kb on + strandat 5546.359 kb on + strandat 5546.359 kb on + strandat 5546.359 kb on + strandat 5546.360 kb on - strandat 5546.382 kb on - strandat 5546.382 kb on - strandat 5546.382 kb on - strandat 5546.427 kb on + strandat 5546.427 kb on + strandat 5546.477 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,543,759 + Pf1N1B4_4996 0.29 -0.3
5,543,979 + Pf1N1B4_4996 0.48 -1.4
5,544,213 + Pf1N1B4_4996 0.68 -0.3
5,544,214 - Pf1N1B4_4996 0.68 +0.3
5,544,214 - Pf1N1B4_4996 0.68 +1.0
5,544,214 - Pf1N1B4_4996 0.68 -0.2
5,544,214 - Pf1N1B4_4996 0.68 -1.7
5,544,222 + Pf1N1B4_4996 0.68 +0.6
5,544,222 + Pf1N1B4_4996 0.68 -0.6
5,544,222 + Pf1N1B4_4996 0.68 +0.4
5,544,222 + Pf1N1B4_4996 0.68 -0.6
5,544,222 + Pf1N1B4_4996 0.68 +0.8
5,544,223 - Pf1N1B4_4996 0.68 +1.4
5,544,223 - Pf1N1B4_4996 0.68 -1.3
5,544,223 - Pf1N1B4_4996 0.68 +1.4
5,544,223 - Pf1N1B4_4996 0.68 +0.4
5,544,283 - Pf1N1B4_4996 0.73 -0.3
5,544,370 + Pf1N1B4_4996 0.81 +0.0
5,544,371 - Pf1N1B4_4996 0.81 +0.3
5,544,371 - -0.6
5,544,396 - Pf1N1B4_4996 0.83 +0.4
5,544,600 + -0.3
5,544,600 + -1.4
5,544,600 + +0.0
5,544,636 - +1.0
5,545,887 + Pf1N1B4_4997 0.77 -0.6
5,545,888 - Pf1N1B4_4997 0.77 -0.2
5,545,891 + Pf1N1B4_4997 0.77 -0.6
5,545,891 + Pf1N1B4_4997 0.77 -0.7
5,545,891 + Pf1N1B4_4997 0.77 +2.0
5,545,891 + Pf1N1B4_4997 0.77 -0.9
5,545,891 + Pf1N1B4_4997 0.77 +0.1
5,545,891 + Pf1N1B4_4997 0.77 -1.2
5,545,891 + Pf1N1B4_4997 0.77 -1.6
5,545,891 + +1.4
5,545,891 + Pf1N1B4_4997 0.77 -2.2
5,545,892 - Pf1N1B4_4997 0.77 -0.5
5,545,892 - Pf1N1B4_4997 0.77 -1.9
5,546,049 + Pf1N1B4_4997 0.87 -2.7
5,546,208 + +0.1
5,546,252 + +0.0
5,546,253 - +0.4
5,546,264 + +0.4
5,546,264 + +1.9
5,546,264 + +1.4
5,546,264 + -0.2
5,546,264 + -1.2
5,546,265 - +0.4
5,546,265 - -0.6
5,546,333 + +0.8
5,546,359 + -2.4
5,546,359 + -0.4
5,546,359 + -0.7
5,546,359 + -0.6
5,546,360 - -0.4
5,546,382 - +0.0
5,546,382 - +0.4
5,546,382 - -0.9
5,546,427 + +0.4
5,546,427 + -0.2
5,546,477 + -0.2

Or see this region's nucleotide sequence