Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4957

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4956 and Pf1N1B4_4957 are separated by 106 nucleotides Pf1N1B4_4956 - Thioredoxin reductase (EC 1.8.1.9), at 5,495,904 to 5,496,797 _4956 Pf1N1B4_4957 - Transcriptional regulator, TetR family, at 5,496,904 to 5,497,533 _4957 Position (kb) 5496 5497 5498Strain fitness (log2 ratio) -2 -1 0 1 2at 5496.007 kb on + strand, within Pf1N1B4_4956at 5496.008 kb on - strand, within Pf1N1B4_4956at 5496.325 kb on - strand, within Pf1N1B4_4956at 5496.325 kb on - strand, within Pf1N1B4_4956at 5496.334 kb on + strandat 5496.334 kb on + strand, within Pf1N1B4_4956at 5496.334 kb on + strand, within Pf1N1B4_4956at 5496.334 kb on + strand, within Pf1N1B4_4956at 5496.334 kb on + strand, within Pf1N1B4_4956at 5496.334 kb on + strand, within Pf1N1B4_4956at 5496.334 kb on + strand, within Pf1N1B4_4956at 5496.334 kb on + strandat 5496.335 kb on - strand, within Pf1N1B4_4956at 5496.557 kb on + strand, within Pf1N1B4_4956at 5496.558 kb on - strand, within Pf1N1B4_4956at 5496.558 kb on - strand, within Pf1N1B4_4956at 5496.591 kb on - strand, within Pf1N1B4_4956at 5496.661 kb on - strand, within Pf1N1B4_4956at 5497.055 kb on + strandat 5497.056 kb on - strand, within Pf1N1B4_4957at 5497.203 kb on - strandat 5497.292 kb on - strand, within Pf1N1B4_4957at 5497.383 kb on - strand, within Pf1N1B4_4957at 5497.532 kb on - strandat 5497.650 kb on + strandat 5497.714 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,496,007 + Pf1N1B4_4956 0.12 +1.4
5,496,008 - Pf1N1B4_4956 0.12 +1.0
5,496,325 - Pf1N1B4_4956 0.47 +0.0
5,496,325 - Pf1N1B4_4956 0.47 +0.4
5,496,334 + -1.2
5,496,334 + Pf1N1B4_4956 0.48 +0.4
5,496,334 + Pf1N1B4_4956 0.48 -2.5
5,496,334 + Pf1N1B4_4956 0.48 -0.6
5,496,334 + Pf1N1B4_4956 0.48 -0.3
5,496,334 + Pf1N1B4_4956 0.48 +0.1
5,496,334 + Pf1N1B4_4956 0.48 -0.4
5,496,334 + -1.6
5,496,335 - Pf1N1B4_4956 0.48 -1.7
5,496,557 + Pf1N1B4_4956 0.73 +2.4
5,496,558 - Pf1N1B4_4956 0.73 +0.4
5,496,558 - Pf1N1B4_4956 0.73 -0.3
5,496,591 - Pf1N1B4_4956 0.77 -0.0
5,496,661 - Pf1N1B4_4956 0.85 -0.2
5,497,055 + -0.6
5,497,056 - Pf1N1B4_4957 0.24 -1.1
5,497,203 - +0.4
5,497,292 - Pf1N1B4_4957 0.62 +0.2
5,497,383 - Pf1N1B4_4957 0.76 -1.4
5,497,532 - +0.2
5,497,650 + -0.2
5,497,714 + -2.2

Or see this region's nucleotide sequence