Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4937 and Pf1N1B4_4938 are separated by 190 nucleotides Pf1N1B4_4938 and Pf1N1B4_4939 are separated by 205 nucleotides Pf1N1B4_4939 and Pf1N1B4_4940 are separated by 55 nucleotides Pf1N1B4_4940 and Pf1N1B4_4941 are separated by 169 nucleotides
Pf1N1B4_4937 - Two-component hybrid sensor and regulator, at 5,473,465 to 5,475,384
_4937
Pf1N1B4_4938 - Regulator of cell morphogenesis and NO signaling, at 5,475,575 to 5,476,051
_4938
Pf1N1B4_4939 - sodium/hydrogen exchanger family protein, at 5,476,257 to 5,477,603
_4939
Pf1N1B4_4940 - probable membrane protein YPO2362, at 5,477,659 to 5,478,270
_4940
Pf1N1B4_4941 - competence/damage-inducible protein CinA, at 5,478,440 to 5,478,952
_4941
Position (kb) 5476
5477
5478 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5475.399 kb on + strand at 5475.399 kb on + strand at 5475.550 kb on - strand at 5475.573 kb on - strand at 5475.841 kb on - strand, within Pf1N1B4_4938 at 5475.844 kb on - strand, within Pf1N1B4_4938 at 5475.844 kb on - strand, within Pf1N1B4_4938 at 5476.011 kb on - strand at 5476.069 kb on - strand at 5476.069 kb on - strand at 5476.307 kb on + strand at 5476.405 kb on + strand, within Pf1N1B4_4939 at 5476.417 kb on + strand, within Pf1N1B4_4939 at 5476.417 kb on + strand, within Pf1N1B4_4939 at 5476.418 kb on - strand at 5476.873 kb on + strand, within Pf1N1B4_4939 at 5476.873 kb on + strand, within Pf1N1B4_4939 at 5476.874 kb on - strand, within Pf1N1B4_4939 at 5477.162 kb on - strand, within Pf1N1B4_4939 at 5477.537 kb on - strand at 5477.590 kb on - strand at 5477.678 kb on - strand at 5477.681 kb on + strand at 5477.697 kb on - strand at 5477.731 kb on - strand, within Pf1N1B4_4940 at 5477.844 kb on - strand, within Pf1N1B4_4940 at 5478.183 kb on - strand, within Pf1N1B4_4940 at 5478.216 kb on + strand at 5478.284 kb on + strand at 5478.316 kb on + strand at 5478.316 kb on - strand at 5478.317 kb on - strand at 5478.587 kb on + strand, within Pf1N1B4_4941
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,475,399 + -0.3 5,475,399 + +0.4 5,475,550 - -0.9 5,475,573 - +0.7 5,475,841 - Pf1N1B4_4938 0.56 -0.6 5,475,844 - Pf1N1B4_4938 0.56 -1.2 5,475,844 - Pf1N1B4_4938 0.56 +1.0 5,476,011 - +1.7 5,476,069 - -1.2 5,476,069 - -2.0 5,476,307 + -0.9 5,476,405 + Pf1N1B4_4939 0.11 +0.4 5,476,417 + Pf1N1B4_4939 0.12 -1.9 5,476,417 + Pf1N1B4_4939 0.12 +0.9 5,476,418 - +1.2 5,476,873 + Pf1N1B4_4939 0.46 -2.4 5,476,873 + Pf1N1B4_4939 0.46 -2.6 5,476,874 - Pf1N1B4_4939 0.46 -1.4 5,477,162 - Pf1N1B4_4939 0.67 +0.4 5,477,537 - +3.0 5,477,590 - +2.0 5,477,678 - +0.8 5,477,681 + +2.4 5,477,697 - +1.4 5,477,731 - Pf1N1B4_4940 0.12 -0.6 5,477,844 - Pf1N1B4_4940 0.30 -0.1 5,478,183 - Pf1N1B4_4940 0.86 +0.0 5,478,216 + +0.4 5,478,284 + +2.2 5,478,316 + -0.2 5,478,316 - +0.0 5,478,317 - +1.0 5,478,587 + Pf1N1B4_4941 0.29 -0.1
Or see this region's nucleotide sequence