Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4917 and Pf1N1B4_4918 are separated by 112 nucleotides Pf1N1B4_4918 and Pf1N1B4_4919 are separated by 69 nucleotides
Pf1N1B4_4917 - Conserved protein containing metal-dependent amidohydrolase family domain, at 5,448,063 to 5,449,580
_4917
Pf1N1B4_4918 - Predicted enzyme of the cupin superfamily, at 5,449,693 to 5,450,406
_4918
Pf1N1B4_4919 - Histone acetyltransferase HPA2 and related acetyltransferases, at 5,450,476 to 5,451,333
_4919
Position (kb) 5449
5450
5451 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5449.064 kb on + strand, within Pf1N1B4_4917 at 5449.572 kb on + strand at 5449.601 kb on + strand at 5449.671 kb on + strand at 5449.671 kb on + strand at 5449.694 kb on + strand at 5449.706 kb on + strand at 5449.721 kb on + strand at 5449.721 kb on + strand at 5449.789 kb on + strand, within Pf1N1B4_4918 at 5449.789 kb on + strand, within Pf1N1B4_4918 at 5449.959 kb on + strand at 5449.972 kb on + strand, within Pf1N1B4_4918 at 5450.186 kb on + strand, within Pf1N1B4_4918 at 5450.186 kb on + strand at 5450.187 kb on - strand, within Pf1N1B4_4918 at 5450.358 kb on + strand at 5450.406 kb on + strand at 5450.406 kb on + strand at 5450.406 kb on + strand at 5450.435 kb on + strand at 5450.436 kb on - strand at 5450.436 kb on - strand at 5450.436 kb on - strand at 5450.993 kb on + strand at 5451.095 kb on + strand, within Pf1N1B4_4919 at 5451.308 kb on + strand at 5451.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,449,064 + Pf1N1B4_4917 0.66 -0.4 5,449,572 + +0.4 5,449,601 + +1.4 5,449,671 + -0.6 5,449,671 + -0.4 5,449,694 + +1.4 5,449,706 + +0.4 5,449,721 + +1.0 5,449,721 + -1.6 5,449,789 + Pf1N1B4_4918 0.13 -0.7 5,449,789 + Pf1N1B4_4918 0.13 -0.2 5,449,959 + -0.6 5,449,972 + Pf1N1B4_4918 0.39 -2.2 5,450,186 + Pf1N1B4_4918 0.69 -1.2 5,450,186 + +0.4 5,450,187 - Pf1N1B4_4918 0.69 -0.3 5,450,358 + +0.8 5,450,406 + +0.4 5,450,406 + +0.4 5,450,406 + -0.2 5,450,435 + +0.0 5,450,436 - +0.7 5,450,436 - +1.6 5,450,436 - -0.6 5,450,993 + +1.4 5,451,095 + Pf1N1B4_4919 0.72 -0.2 5,451,308 + -0.2 5,451,309 - +2.0
Or see this region's nucleotide sequence