Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4838 and Pf1N1B4_4839 are separated by 12 nucleotides Pf1N1B4_4839 and Pf1N1B4_4840 are separated by 1 nucleotides Pf1N1B4_4840 and Pf1N1B4_4841 are separated by 685 nucleotides
Pf1N1B4_4838 - Putative lipase, at 5,343,703 to 5,345,832
_4838
Pf1N1B4_4839 - lipoprotein, at 5,345,845 to 5,346,639
_4839
Pf1N1B4_4840 - hypothetical protein, at 5,346,641 to 5,346,766
_4840
Pf1N1B4_4841 - hypothetical protein, at 5,347,452 to 5,348,303
_4841
Position (kb)
5345
5346
5347 Strain fitness (log2 ratio)
-2
-1
0
1 at 5345.122 kb on - strand at 5345.186 kb on + strand, within Pf1N1B4_4838 at 5345.335 kb on + strand, within Pf1N1B4_4838 at 5345.589 kb on - strand, within Pf1N1B4_4838 at 5345.917 kb on - strand at 5346.297 kb on - strand, within Pf1N1B4_4839 at 5346.332 kb on - strand, within Pf1N1B4_4839 at 5346.485 kb on + strand, within Pf1N1B4_4839 at 5346.486 kb on - strand at 5346.544 kb on - strand, within Pf1N1B4_4839 at 5346.812 kb on - strand at 5346.852 kb on - strand at 5347.080 kb on - strand at 5347.080 kb on - strand at 5347.101 kb on + strand at 5347.264 kb on + strand at 5347.264 kb on + strand at 5347.290 kb on + strand at 5347.291 kb on - strand at 5347.291 kb on - strand at 5347.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,345,122 - -0.6 5,345,186 + Pf1N1B4_4838 0.70 -0.4 5,345,335 + Pf1N1B4_4838 0.77 +0.6 5,345,589 - Pf1N1B4_4838 0.89 -0.4 5,345,917 - -0.3 5,346,297 - Pf1N1B4_4839 0.57 -0.6 5,346,332 - Pf1N1B4_4839 0.61 -2.1 5,346,485 + Pf1N1B4_4839 0.81 -1.6 5,346,486 - -0.6 5,346,544 - Pf1N1B4_4839 0.88 +0.2 5,346,812 - +0.7 5,346,852 - +1.4 5,347,080 - +0.4 5,347,080 - -1.2 5,347,101 + +0.9 5,347,264 + +1.0 5,347,264 + -0.6 5,347,290 + +0.2 5,347,291 - -0.1 5,347,291 - -1.2 5,347,474 - -1.6
Or see this region's nucleotide sequence