Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4829 and Pf1N1B4_4830 are separated by 46 nucleotides Pf1N1B4_4830 and Pf1N1B4_4831 are separated by 5 nucleotides
Pf1N1B4_4829 - Membrane protein, putative, at 5,333,242 to 5,334,234
_4829
Pf1N1B4_4830 - Membrane fusion component of tripartite multidrug resistance system, at 5,334,281 to 5,335,420
_4830
Pf1N1B4_4831 - Outer membrane protein assembly factor YaeT precursor, at 5,335,426 to 5,336,895
_4831
Position (kb)
5334
5335
5336 Strain fitness (log2 ratio)
-2
-1
0
1 at 5333.294 kb on + strand at 5333.360 kb on + strand, within Pf1N1B4_4829 at 5333.360 kb on + strand at 5333.361 kb on - strand at 5334.000 kb on + strand, within Pf1N1B4_4829 at 5334.000 kb on + strand, within Pf1N1B4_4829 at 5334.001 kb on - strand, within Pf1N1B4_4829 at 5334.001 kb on - strand, within Pf1N1B4_4829 at 5334.283 kb on - strand at 5334.291 kb on + strand at 5334.291 kb on + strand at 5334.291 kb on + strand at 5334.292 kb on - strand at 5334.292 kb on - strand at 5334.292 kb on - strand at 5334.765 kb on - strand, within Pf1N1B4_4830 at 5335.268 kb on - strand at 5335.270 kb on - strand, within Pf1N1B4_4830 at 5335.297 kb on - strand, within Pf1N1B4_4830 at 5335.616 kb on + strand, within Pf1N1B4_4831 at 5335.616 kb on + strand, within Pf1N1B4_4831 at 5335.617 kb on - strand, within Pf1N1B4_4831 at 5335.864 kb on - strand, within Pf1N1B4_4831 at 5336.218 kb on + strand, within Pf1N1B4_4831 at 5336.219 kb on - strand, within Pf1N1B4_4831
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,333,294 + +0.8 5,333,360 + Pf1N1B4_4829 0.12 -0.8 5,333,360 + +0.4 5,333,361 - -0.2 5,334,000 + Pf1N1B4_4829 0.76 -0.2 5,334,000 + Pf1N1B4_4829 0.76 -0.3 5,334,001 - Pf1N1B4_4829 0.76 -1.9 5,334,001 - Pf1N1B4_4829 0.76 +0.3 5,334,283 - +1.2 5,334,291 + +0.1 5,334,291 + -0.9 5,334,291 + -0.0 5,334,292 - +0.4 5,334,292 - +1.0 5,334,292 - +0.7 5,334,765 - Pf1N1B4_4830 0.42 +0.8 5,335,268 - +1.0 5,335,270 - Pf1N1B4_4830 0.87 +1.0 5,335,297 - Pf1N1B4_4830 0.89 -1.2 5,335,616 + Pf1N1B4_4831 0.13 +1.2 5,335,616 + Pf1N1B4_4831 0.13 +0.4 5,335,617 - Pf1N1B4_4831 0.13 +1.2 5,335,864 - Pf1N1B4_4831 0.30 +0.1 5,336,218 + Pf1N1B4_4831 0.54 -1.6 5,336,219 - Pf1N1B4_4831 0.54 +0.0
Or see this region's nucleotide sequence