Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4765

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4764 and Pf1N1B4_4765 are separated by 61 nucleotidesPf1N1B4_4765 and Pf1N1B4_4766 overlap by 8 nucleotidesPf1N1B4_4766 and Pf1N1B4_4767 are separated by 165 nucleotides Pf1N1B4_4764 - 2-ketogluconate transporter, at 5,260,243 to 5,261,529 _4764 Pf1N1B4_4765 - 2-ketogluconate kinase (EC 2.7.1.13), at 5,261,591 to 5,262,610 _4765 Pf1N1B4_4766 - Epimerase KguE, at 5,262,603 to 5,263,385 _4766 Pf1N1B4_4767 - 2-ketogluconate utilization repressor PtxS, at 5,263,551 to 5,264,576 _4767 Position (kb) 5261 5262 5263Strain fitness (log2 ratio) -2 -1 0 1at 5260.593 kb on - strandat 5260.593 kb on - strand, within Pf1N1B4_4764at 5260.700 kb on + strand, within Pf1N1B4_4764at 5260.981 kb on - strand, within Pf1N1B4_4764at 5261.315 kb on + strandat 5261.315 kb on + strandat 5261.315 kb on + strand, within Pf1N1B4_4764at 5261.316 kb on - strand, within Pf1N1B4_4764at 5261.435 kb on + strandat 5261.436 kb on - strandat 5261.465 kb on + strandat 5261.493 kb on - strandat 5261.493 kb on - strandat 5261.493 kb on - strandat 5261.493 kb on - strandat 5261.493 kb on - strandat 5261.493 kb on - strandat 5261.493 kb on - strandat 5261.529 kb on + strandat 5261.908 kb on - strand, within Pf1N1B4_4765at 5261.908 kb on - strand, within Pf1N1B4_4765at 5261.908 kb on - strand, within Pf1N1B4_4765at 5261.962 kb on - strand, within Pf1N1B4_4765at 5262.291 kb on + strandat 5262.291 kb on + strand, within Pf1N1B4_4765at 5262.701 kb on - strand, within Pf1N1B4_4766at 5262.897 kb on - strand, within Pf1N1B4_4766at 5263.190 kb on - strandat 5263.388 kb on + strandat 5263.389 kb on + strandat 5263.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,260,593 - -0.6
5,260,593 - Pf1N1B4_4764 0.27 -0.6
5,260,700 + Pf1N1B4_4764 0.36 +0.2
5,260,981 - Pf1N1B4_4764 0.57 -1.5
5,261,315 + -1.2
5,261,315 + +0.4
5,261,315 + Pf1N1B4_4764 0.83 +1.0
5,261,316 - Pf1N1B4_4764 0.83 -2.3
5,261,435 + -1.9
5,261,436 - -0.3
5,261,465 + -1.3
5,261,493 - +0.0
5,261,493 - +1.2
5,261,493 - +0.0
5,261,493 - +0.7
5,261,493 - +0.1
5,261,493 - +0.4
5,261,493 - -1.6
5,261,529 + +0.7
5,261,908 - Pf1N1B4_4765 0.31 +0.3
5,261,908 - Pf1N1B4_4765 0.31 -1.9
5,261,908 - Pf1N1B4_4765 0.31 -0.6
5,261,962 - Pf1N1B4_4765 0.36 -0.6
5,262,291 + +0.4
5,262,291 + Pf1N1B4_4765 0.69 -2.4
5,262,701 - Pf1N1B4_4766 0.13 -0.9
5,262,897 - Pf1N1B4_4766 0.38 -0.6
5,263,190 - +0.0
5,263,388 + +1.0
5,263,389 + -0.4
5,263,429 + +0.4

Or see this region's nucleotide sequence