Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4407 and Pf1N1B4_4408 are separated by 917 nucleotides Pf1N1B4_4408 and Pf1N1B4_4409 are separated by 402 nucleotides Pf1N1B4_4409 and Pf1N1B4_4410 are separated by 192 nucleotides
Pf1N1B4_4407 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 4,867,442 to 4,871,356
_4407
Pf1N1B4_4408 - two-component response regulator, at 4,872,274 to 4,872,879
_4408
Pf1N1B4_4409 - hypothetical protein, at 4,873,282 to 4,873,398
_4409
Pf1N1B4_4410 - hypothetical protein, at 4,873,591 to 4,873,770
_4410
Position (kb)
4872
4873 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4871.478 kb on + strand at 4871.961 kb on + strand at 4872.344 kb on + strand, within Pf1N1B4_4408 at 4872.471 kb on + strand, within Pf1N1B4_4408 at 4872.738 kb on + strand, within Pf1N1B4_4408 at 4873.005 kb on + strand at 4873.284 kb on - strand at 4873.284 kb on - strand at 4873.284 kb on - strand at 4873.284 kb on - strand at 4873.329 kb on - strand, within Pf1N1B4_4409 at 4873.329 kb on - strand at 4873.476 kb on + strand at 4873.476 kb on + strand at 4873.476 kb on + strand at 4873.477 kb on - strand at 4873.477 kb on - strand at 4873.477 kb on - strand at 4873.477 kb on - strand at 4873.740 kb on + strand, within Pf1N1B4_4410 at 4873.741 kb on - strand, within Pf1N1B4_4410 at 4873.792 kb on - strand at 4873.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,871,478 + +0.8 4,871,961 + -0.2 4,872,344 + Pf1N1B4_4408 0.12 -0.5 4,872,471 + Pf1N1B4_4408 0.33 -2.5 4,872,738 + Pf1N1B4_4408 0.77 -0.8 4,873,005 + +0.4 4,873,284 - -0.4 4,873,284 - -0.1 4,873,284 - +0.5 4,873,284 - -0.2 4,873,329 - Pf1N1B4_4409 0.40 -0.5 4,873,329 - +1.5 4,873,476 + -1.2 4,873,476 + +0.3 4,873,476 + +0.2 4,873,477 - +0.5 4,873,477 - +0.5 4,873,477 - -2.3 4,873,477 - +2.1 4,873,740 + Pf1N1B4_4410 0.83 +2.8 4,873,741 - Pf1N1B4_4410 0.83 -2.2 4,873,792 - +1.5 4,873,835 + -0.1
Or see this region's nucleotide sequence