Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4395 and Pf1N1B4_4396 are separated by 126 nucleotides Pf1N1B4_4396 and Pf1N1B4_4397 are separated by 18 nucleotides
Pf1N1B4_4395 - Transcriptional regulator RpiR in protein degradation cluster, at 4,854,888 to 4,855,796
_4395
Pf1N1B4_4396 - Arginine/ornithine ABC transporter, ATP-binding protein AotP, at 4,855,923 to 4,856,687
_4396
Pf1N1B4_4397 - Succinylglutamate desuccinylase/aspartoacylase, at 4,856,706 to 4,857,818
_4397
Position (kb)
4855
4856
4857 Strain fitness (log2 ratio)
-2
-1
0
1 at 4854.928 kb on + strand at 4854.978 kb on - strand at 4855.330 kb on + strand, within Pf1N1B4_4395 at 4855.358 kb on - strand, within Pf1N1B4_4395 at 4855.688 kb on + strand, within Pf1N1B4_4395 at 4856.240 kb on + strand, within Pf1N1B4_4396 at 4856.240 kb on + strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.558 kb on + strand at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.658 kb on - strand at 4856.683 kb on + strand at 4856.693 kb on + strand at 4856.804 kb on - strand at 4856.947 kb on + strand at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand at 4857.287 kb on - strand, within Pf1N1B4_4397 at 4857.287 kb on - strand, within Pf1N1B4_4397 at 4857.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,854,928 + +0.5 4,854,978 - +1.5 4,855,330 + Pf1N1B4_4395 0.49 +0.9 4,855,358 - Pf1N1B4_4395 0.52 +0.2 4,855,688 + Pf1N1B4_4395 0.88 -1.9 4,856,240 + Pf1N1B4_4396 0.41 +0.3 4,856,240 + Pf1N1B4_4396 0.41 -1.1 4,856,241 - Pf1N1B4_4396 0.42 -0.3 4,856,241 - Pf1N1B4_4396 0.42 -0.5 4,856,241 - Pf1N1B4_4396 0.42 +0.5 4,856,241 - Pf1N1B4_4396 0.42 -0.9 4,856,558 + -0.2 4,856,558 + Pf1N1B4_4396 0.83 -0.8 4,856,558 + Pf1N1B4_4396 0.83 -1.8 4,856,558 + Pf1N1B4_4396 0.83 -1.5 4,856,658 - +0.6 4,856,683 + -1.2 4,856,693 + +0.5 4,856,804 - +1.5 4,856,947 + +1.5 4,857,286 + Pf1N1B4_4397 0.52 +0.2 4,857,286 + Pf1N1B4_4397 0.52 -1.4 4,857,286 + Pf1N1B4_4397 0.52 +0.2 4,857,286 + Pf1N1B4_4397 0.52 +1.0 4,857,286 + Pf1N1B4_4397 0.52 -0.1 4,857,286 + +0.5 4,857,287 - Pf1N1B4_4397 0.52 -1.5 4,857,287 - Pf1N1B4_4397 0.52 +1.2 4,857,287 - -0.8
Or see this region's nucleotide sequence