Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4396

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4395 and Pf1N1B4_4396 are separated by 126 nucleotidesPf1N1B4_4396 and Pf1N1B4_4397 are separated by 18 nucleotides Pf1N1B4_4395 - Transcriptional regulator RpiR in protein degradation cluster, at 4,854,888 to 4,855,796 _4395 Pf1N1B4_4396 - Arginine/ornithine ABC transporter, ATP-binding protein AotP, at 4,855,923 to 4,856,687 _4396 Pf1N1B4_4397 - Succinylglutamate desuccinylase/aspartoacylase, at 4,856,706 to 4,857,818 _4397 Position (kb) 4855 4856 4857Strain fitness (log2 ratio) -2 -1 0 1at 4854.928 kb on + strandat 4854.978 kb on - strandat 4855.330 kb on + strand, within Pf1N1B4_4395at 4855.358 kb on - strand, within Pf1N1B4_4395at 4855.688 kb on + strand, within Pf1N1B4_4395at 4856.240 kb on + strand, within Pf1N1B4_4396at 4856.240 kb on + strand, within Pf1N1B4_4396at 4856.241 kb on - strand, within Pf1N1B4_4396at 4856.241 kb on - strand, within Pf1N1B4_4396at 4856.241 kb on - strand, within Pf1N1B4_4396at 4856.241 kb on - strand, within Pf1N1B4_4396at 4856.558 kb on + strandat 4856.558 kb on + strand, within Pf1N1B4_4396at 4856.558 kb on + strand, within Pf1N1B4_4396at 4856.558 kb on + strand, within Pf1N1B4_4396at 4856.658 kb on - strandat 4856.683 kb on + strandat 4856.693 kb on + strandat 4856.804 kb on - strandat 4856.947 kb on + strandat 4857.286 kb on + strand, within Pf1N1B4_4397at 4857.286 kb on + strand, within Pf1N1B4_4397at 4857.286 kb on + strand, within Pf1N1B4_4397at 4857.286 kb on + strand, within Pf1N1B4_4397at 4857.286 kb on + strand, within Pf1N1B4_4397at 4857.286 kb on + strandat 4857.287 kb on - strand, within Pf1N1B4_4397at 4857.287 kb on - strand, within Pf1N1B4_4397at 4857.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,854,928 + +0.5
4,854,978 - +1.5
4,855,330 + Pf1N1B4_4395 0.49 +0.9
4,855,358 - Pf1N1B4_4395 0.52 +0.2
4,855,688 + Pf1N1B4_4395 0.88 -1.9
4,856,240 + Pf1N1B4_4396 0.41 +0.3
4,856,240 + Pf1N1B4_4396 0.41 -1.1
4,856,241 - Pf1N1B4_4396 0.42 -0.3
4,856,241 - Pf1N1B4_4396 0.42 -0.5
4,856,241 - Pf1N1B4_4396 0.42 +0.5
4,856,241 - Pf1N1B4_4396 0.42 -0.9
4,856,558 + -0.2
4,856,558 + Pf1N1B4_4396 0.83 -0.8
4,856,558 + Pf1N1B4_4396 0.83 -1.8
4,856,558 + Pf1N1B4_4396 0.83 -1.5
4,856,658 - +0.6
4,856,683 + -1.2
4,856,693 + +0.5
4,856,804 - +1.5
4,856,947 + +1.5
4,857,286 + Pf1N1B4_4397 0.52 +0.2
4,857,286 + Pf1N1B4_4397 0.52 -1.4
4,857,286 + Pf1N1B4_4397 0.52 +0.2
4,857,286 + Pf1N1B4_4397 0.52 +1.0
4,857,286 + Pf1N1B4_4397 0.52 -0.1
4,857,286 + +0.5
4,857,287 - Pf1N1B4_4397 0.52 -1.5
4,857,287 - Pf1N1B4_4397 0.52 +1.2
4,857,287 - -0.8

Or see this region's nucleotide sequence