Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4336 and Pf1N1B4_4337 are separated by 94 nucleotides Pf1N1B4_4337 and Pf1N1B4_4338 are separated by 105 nucleotides
Pf1N1B4_4336 - FMN-dependent NADH-azoreductase, at 4,795,252 to 4,795,893
_4336
Pf1N1B4_4337 - Transcriptional regulator, at 4,795,988 to 4,796,842
_4337
Pf1N1B4_4338 - Mobile element protein, at 4,796,948 to 4,797,976
_4338
Position (kb)
4795
4796
4797 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4795.190 kb on - strand at 4795.190 kb on - strand at 4795.190 kb on - strand at 4795.195 kb on - strand at 4795.197 kb on - strand at 4795.266 kb on + strand at 4795.267 kb on - strand at 4795.267 kb on - strand at 4795.267 kb on - strand at 4795.400 kb on + strand at 4795.469 kb on + strand, within Pf1N1B4_4336 at 4795.469 kb on + strand, within Pf1N1B4_4336 at 4795.470 kb on - strand, within Pf1N1B4_4336 at 4795.470 kb on - strand, within Pf1N1B4_4336 at 4795.580 kb on + strand at 4795.580 kb on + strand, within Pf1N1B4_4336 at 4795.759 kb on - strand at 4795.809 kb on - strand at 4796.007 kb on + strand at 4796.140 kb on + strand, within Pf1N1B4_4337 at 4796.141 kb on - strand, within Pf1N1B4_4337 at 4796.189 kb on + strand, within Pf1N1B4_4337 at 4796.189 kb on + strand at 4796.603 kb on - strand, within Pf1N1B4_4337 at 4796.709 kb on + strand, within Pf1N1B4_4337 at 4796.710 kb on - strand, within Pf1N1B4_4337 at 4796.710 kb on - strand, within Pf1N1B4_4337 at 4796.819 kb on + strand at 4796.819 kb on + strand at 4796.819 kb on + strand at 4796.819 kb on + strand at 4796.820 kb on - strand at 4796.820 kb on - strand at 4796.864 kb on + strand at 4796.864 kb on + strand at 4796.864 kb on + strand at 4796.864 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,795,190 - +1.2 4,795,190 - +0.5 4,795,190 - -2.5 4,795,195 - +0.2 4,795,197 - +0.1 4,795,266 + -0.0 4,795,267 - -1.5 4,795,267 - +0.5 4,795,267 - -0.5 4,795,400 + -1.8 4,795,469 + Pf1N1B4_4336 0.34 +0.5 4,795,469 + Pf1N1B4_4336 0.34 +0.5 4,795,470 - Pf1N1B4_4336 0.34 +0.5 4,795,470 - Pf1N1B4_4336 0.34 -0.5 4,795,580 + -0.5 4,795,580 + Pf1N1B4_4336 0.51 +0.6 4,795,759 - +0.5 4,795,809 - +2.5 4,796,007 + -0.2 4,796,140 + Pf1N1B4_4337 0.18 +0.5 4,796,141 - Pf1N1B4_4337 0.18 +1.5 4,796,189 + Pf1N1B4_4337 0.24 +1.4 4,796,189 + -1.0 4,796,603 - Pf1N1B4_4337 0.72 +1.0 4,796,709 + Pf1N1B4_4337 0.84 -1.5 4,796,710 - Pf1N1B4_4337 0.84 +0.5 4,796,710 - Pf1N1B4_4337 0.84 +0.5 4,796,819 + -0.8 4,796,819 + +0.5 4,796,819 + -1.3 4,796,819 + -0.5 4,796,820 - +0.3 4,796,820 - +1.5 4,796,864 + -0.5 4,796,864 + -0.8 4,796,864 + -2.3 4,796,864 + -1.5
Or see this region's nucleotide sequence