Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4296

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4294 and Pf1N1B4_4295 overlap by 1 nucleotidesPf1N1B4_4295 and Pf1N1B4_4296 are separated by 119 nucleotidesPf1N1B4_4296 and Pf1N1B4_4297 are separated by 228 nucleotidesPf1N1B4_4297 and Pf1N1B4_4298 are separated by 148 nucleotides Pf1N1B4_4294 - FIG00954439: hypothetical protein, at 4,758,295 to 4,758,744 _4294 Pf1N1B4_4295 - FIG00954434: hypothetical protein, at 4,758,744 to 4,758,947 _4295 Pf1N1B4_4296 - Histidine transporter, periplasmic histidine-binding protein, at 4,759,067 to 4,760,083 _4296 Pf1N1B4_4297 - FIG00966599: hypothetical protein, at 4,760,312 to 4,760,749 _4297 Pf1N1B4_4298 - Mobile element protein, at 4,760,898 to 4,762,199 _4298 Position (kb) 4759 4760 4761Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4758.281 kb on + strandat 4758.285 kb on + strandat 4758.286 kb on - strandat 4758.339 kb on + strandat 4758.394 kb on + strand, within Pf1N1B4_4294at 4758.394 kb on + strand, within Pf1N1B4_4294at 4758.394 kb on + strand, within Pf1N1B4_4294at 4758.394 kb on + strand, within Pf1N1B4_4294at 4758.395 kb on - strand, within Pf1N1B4_4294at 4758.615 kb on + strand, within Pf1N1B4_4294at 4758.743 kb on - strandat 4758.743 kb on - strandat 4758.870 kb on + strand, within Pf1N1B4_4295at 4758.870 kb on + strand, within Pf1N1B4_4295at 4758.871 kb on - strand, within Pf1N1B4_4295at 4758.891 kb on + strand, within Pf1N1B4_4295at 4758.892 kb on - strand, within Pf1N1B4_4295at 4758.945 kb on + strandat 4758.979 kb on - strandat 4758.979 kb on - strandat 4758.997 kb on - strandat 4759.086 kb on + strandat 4759.116 kb on + strandat 4759.250 kb on - strand, within Pf1N1B4_4296at 4759.486 kb on + strand, within Pf1N1B4_4296at 4759.506 kb on - strand, within Pf1N1B4_4296at 4759.628 kb on + strand, within Pf1N1B4_4296at 4759.629 kb on - strand, within Pf1N1B4_4296at 4759.629 kb on - strand, within Pf1N1B4_4296at 4759.629 kb on - strand, within Pf1N1B4_4296at 4759.712 kb on + strand, within Pf1N1B4_4296at 4759.713 kb on - strand, within Pf1N1B4_4296at 4759.713 kb on - strand, within Pf1N1B4_4296at 4759.715 kb on + strand, within Pf1N1B4_4296at 4759.889 kb on + strand, within Pf1N1B4_4296at 4760.081 kb on + strandat 4760.081 kb on + strandat 4760.255 kb on - strandat 4760.311 kb on + strandat 4760.311 kb on + strandat 4760.311 kb on + strandat 4760.311 kb on + strandat 4760.312 kb on - strandat 4760.312 kb on - strandat 4760.352 kb on + strandat 4760.375 kb on + strand, within Pf1N1B4_4297at 4760.543 kb on + strand, within Pf1N1B4_4297at 4760.544 kb on - strandat 4760.762 kb on + strandat 4760.763 kb on - strandat 4760.763 kb on - strandat 4760.837 kb on + strandat 4760.837 kb on + strandat 4760.838 kb on - strandat 4760.882 kb on - strandat 4760.882 kb on - strandat 4760.882 kb on - strandat 4760.882 kb on - strandat 4760.882 kb on - strandat 4760.882 kb on - strandat 4760.882 kb on - strandat 4760.882 kb on - strandat 4760.886 kb on - strandat 4760.886 kb on - strandat 4760.886 kb on - strandat 4760.886 kb on - strandat 4760.886 kb on - strandat 4760.886 kb on - strandat 4760.890 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,758,281 + +1.2
4,758,285 + -0.2
4,758,286 - +2.6
4,758,339 + +0.8
4,758,394 + Pf1N1B4_4294 0.22 -0.4
4,758,394 + Pf1N1B4_4294 0.22 +1.2
4,758,394 + Pf1N1B4_4294 0.22 +0.6
4,758,394 + Pf1N1B4_4294 0.22 +1.6
4,758,395 - Pf1N1B4_4294 0.22 -0.4
4,758,615 + Pf1N1B4_4294 0.71 -0.0
4,758,743 - +1.2
4,758,743 - -1.0
4,758,870 + Pf1N1B4_4295 0.62 +0.2
4,758,870 + Pf1N1B4_4295 0.62 -1.1
4,758,871 - Pf1N1B4_4295 0.62 -0.8
4,758,891 + Pf1N1B4_4295 0.72 +1.6
4,758,892 - Pf1N1B4_4295 0.73 +0.6
4,758,945 + +1.3
4,758,979 - +0.3
4,758,979 - +1.2
4,758,997 - -0.9
4,759,086 + -0.4
4,759,116 + +2.9
4,759,250 - Pf1N1B4_4296 0.18 -1.4
4,759,486 + Pf1N1B4_4296 0.41 +0.6
4,759,506 - Pf1N1B4_4296 0.43 -1.2
4,759,628 + Pf1N1B4_4296 0.55 -2.0
4,759,629 - Pf1N1B4_4296 0.55 -0.2
4,759,629 - Pf1N1B4_4296 0.55 -0.2
4,759,629 - Pf1N1B4_4296 0.55 +0.6
4,759,712 + Pf1N1B4_4296 0.63 -0.4
4,759,713 - Pf1N1B4_4296 0.64 -1.0
4,759,713 - Pf1N1B4_4296 0.64 -0.6
4,759,715 + Pf1N1B4_4296 0.64 -1.0
4,759,889 + Pf1N1B4_4296 0.81 -0.4
4,760,081 + -0.2
4,760,081 + -0.4
4,760,255 - +1.2
4,760,311 + -0.8
4,760,311 + -0.8
4,760,311 + +0.1
4,760,311 + +0.1
4,760,312 - +0.6
4,760,312 - +0.5
4,760,352 + -1.2
4,760,375 + Pf1N1B4_4297 0.14 +0.1
4,760,543 + Pf1N1B4_4297 0.53 +0.5
4,760,544 - +0.6
4,760,762 + -0.1
4,760,763 - +0.0
4,760,763 - -1.4
4,760,837 + -1.4
4,760,837 + +0.1
4,760,838 - -1.0
4,760,882 - -2.2
4,760,882 - -0.4
4,760,882 - +0.6
4,760,882 - +1.6
4,760,882 - -0.6
4,760,882 - -0.8
4,760,882 - +0.2
4,760,882 - +0.2
4,760,886 - -0.4
4,760,886 - +1.6
4,760,886 - -0.0
4,760,886 - -0.1
4,760,886 - -0.2
4,760,886 - +1.7
4,760,890 - +1.6

Or see this region's nucleotide sequence