Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4294 and Pf1N1B4_4295 overlap by 1 nucleotides Pf1N1B4_4295 and Pf1N1B4_4296 are separated by 119 nucleotides Pf1N1B4_4296 and Pf1N1B4_4297 are separated by 228 nucleotides Pf1N1B4_4297 and Pf1N1B4_4298 are separated by 148 nucleotides
Pf1N1B4_4294 - FIG00954439: hypothetical protein, at 4,758,295 to 4,758,744
_4294
Pf1N1B4_4295 - FIG00954434: hypothetical protein, at 4,758,744 to 4,758,947
_4295
Pf1N1B4_4296 - Histidine transporter, periplasmic histidine-binding protein, at 4,759,067 to 4,760,083
_4296
Pf1N1B4_4297 - FIG00966599: hypothetical protein, at 4,760,312 to 4,760,749
_4297
Pf1N1B4_4298 - Mobile element protein, at 4,760,898 to 4,762,199
_4298
Position (kb)
4759
4760
4761 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4758.281 kb on + strand at 4758.285 kb on + strand at 4758.286 kb on - strand at 4758.339 kb on + strand at 4758.394 kb on + strand, within Pf1N1B4_4294 at 4758.394 kb on + strand, within Pf1N1B4_4294 at 4758.394 kb on + strand, within Pf1N1B4_4294 at 4758.394 kb on + strand, within Pf1N1B4_4294 at 4758.395 kb on - strand, within Pf1N1B4_4294 at 4758.615 kb on + strand, within Pf1N1B4_4294 at 4758.743 kb on - strand at 4758.743 kb on - strand at 4758.870 kb on + strand, within Pf1N1B4_4295 at 4758.870 kb on + strand, within Pf1N1B4_4295 at 4758.871 kb on - strand, within Pf1N1B4_4295 at 4758.891 kb on + strand, within Pf1N1B4_4295 at 4758.892 kb on - strand, within Pf1N1B4_4295 at 4758.945 kb on + strand at 4758.979 kb on - strand at 4758.979 kb on - strand at 4758.997 kb on - strand at 4759.086 kb on + strand at 4759.116 kb on + strand at 4759.250 kb on - strand, within Pf1N1B4_4296 at 4759.486 kb on + strand, within Pf1N1B4_4296 at 4759.506 kb on - strand, within Pf1N1B4_4296 at 4759.628 kb on + strand, within Pf1N1B4_4296 at 4759.629 kb on - strand, within Pf1N1B4_4296 at 4759.629 kb on - strand, within Pf1N1B4_4296 at 4759.629 kb on - strand, within Pf1N1B4_4296 at 4759.712 kb on + strand, within Pf1N1B4_4296 at 4759.713 kb on - strand, within Pf1N1B4_4296 at 4759.713 kb on - strand, within Pf1N1B4_4296 at 4759.715 kb on + strand, within Pf1N1B4_4296 at 4759.889 kb on + strand, within Pf1N1B4_4296 at 4760.081 kb on + strand at 4760.081 kb on + strand at 4760.255 kb on - strand at 4760.311 kb on + strand at 4760.311 kb on + strand at 4760.311 kb on + strand at 4760.311 kb on + strand at 4760.312 kb on - strand at 4760.312 kb on - strand at 4760.352 kb on + strand at 4760.375 kb on + strand, within Pf1N1B4_4297 at 4760.543 kb on + strand, within Pf1N1B4_4297 at 4760.544 kb on - strand at 4760.762 kb on + strand at 4760.763 kb on - strand at 4760.763 kb on - strand at 4760.837 kb on + strand at 4760.837 kb on + strand at 4760.838 kb on - strand at 4760.882 kb on - strand at 4760.882 kb on - strand at 4760.882 kb on - strand at 4760.882 kb on - strand at 4760.882 kb on - strand at 4760.882 kb on - strand at 4760.882 kb on - strand at 4760.882 kb on - strand at 4760.886 kb on - strand at 4760.886 kb on - strand at 4760.886 kb on - strand at 4760.886 kb on - strand at 4760.886 kb on - strand at 4760.886 kb on - strand at 4760.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,758,281 + +1.2 4,758,285 + -0.2 4,758,286 - +2.6 4,758,339 + +0.8 4,758,394 + Pf1N1B4_4294 0.22 -0.4 4,758,394 + Pf1N1B4_4294 0.22 +1.2 4,758,394 + Pf1N1B4_4294 0.22 +0.6 4,758,394 + Pf1N1B4_4294 0.22 +1.6 4,758,395 - Pf1N1B4_4294 0.22 -0.4 4,758,615 + Pf1N1B4_4294 0.71 -0.0 4,758,743 - +1.2 4,758,743 - -1.0 4,758,870 + Pf1N1B4_4295 0.62 +0.2 4,758,870 + Pf1N1B4_4295 0.62 -1.1 4,758,871 - Pf1N1B4_4295 0.62 -0.8 4,758,891 + Pf1N1B4_4295 0.72 +1.6 4,758,892 - Pf1N1B4_4295 0.73 +0.6 4,758,945 + +1.3 4,758,979 - +0.3 4,758,979 - +1.2 4,758,997 - -0.9 4,759,086 + -0.4 4,759,116 + +2.9 4,759,250 - Pf1N1B4_4296 0.18 -1.4 4,759,486 + Pf1N1B4_4296 0.41 +0.6 4,759,506 - Pf1N1B4_4296 0.43 -1.2 4,759,628 + Pf1N1B4_4296 0.55 -2.0 4,759,629 - Pf1N1B4_4296 0.55 -0.2 4,759,629 - Pf1N1B4_4296 0.55 -0.2 4,759,629 - Pf1N1B4_4296 0.55 +0.6 4,759,712 + Pf1N1B4_4296 0.63 -0.4 4,759,713 - Pf1N1B4_4296 0.64 -1.0 4,759,713 - Pf1N1B4_4296 0.64 -0.6 4,759,715 + Pf1N1B4_4296 0.64 -1.0 4,759,889 + Pf1N1B4_4296 0.81 -0.4 4,760,081 + -0.2 4,760,081 + -0.4 4,760,255 - +1.2 4,760,311 + -0.8 4,760,311 + -0.8 4,760,311 + +0.1 4,760,311 + +0.1 4,760,312 - +0.6 4,760,312 - +0.5 4,760,352 + -1.2 4,760,375 + Pf1N1B4_4297 0.14 +0.1 4,760,543 + Pf1N1B4_4297 0.53 +0.5 4,760,544 - +0.6 4,760,762 + -0.1 4,760,763 - +0.0 4,760,763 - -1.4 4,760,837 + -1.4 4,760,837 + +0.1 4,760,838 - -1.0 4,760,882 - -2.2 4,760,882 - -0.4 4,760,882 - +0.6 4,760,882 - +1.6 4,760,882 - -0.6 4,760,882 - -0.8 4,760,882 - +0.2 4,760,882 - +0.2 4,760,886 - -0.4 4,760,886 - +1.6 4,760,886 - -0.0 4,760,886 - -0.1 4,760,886 - -0.2 4,760,886 - +1.7 4,760,890 - +1.6
Or see this region's nucleotide sequence