Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_428 and Pf1N1B4_429 are separated by 210 nucleotides Pf1N1B4_429 and Pf1N1B4_430 are separated by 666 nucleotides
Pf1N1B4_428 - Unknown, at 497,898 to 499,193
_428
Pf1N1B4_429 - FIG00964214: hypothetical protein, at 499,404 to 499,703
_429
Pf1N1B4_430 - hypothetical protein, at 500,370 to 500,486
_430
Position (kb) 499
500 Strain fitness (log2 ratio) -2
-1
0
1
2 at 498.478 kb on + strand at 498.587 kb on + strand, within Pf1N1B4_428 at 498.587 kb on + strand, within Pf1N1B4_428 at 498.610 kb on - strand, within Pf1N1B4_428 at 498.635 kb on + strand, within Pf1N1B4_428 at 498.645 kb on + strand, within Pf1N1B4_428 at 498.646 kb on - strand at 498.646 kb on - strand, within Pf1N1B4_428 at 498.726 kb on + strand, within Pf1N1B4_428 at 498.726 kb on + strand, within Pf1N1B4_428 at 498.727 kb on - strand, within Pf1N1B4_428 at 498.727 kb on - strand, within Pf1N1B4_428 at 498.728 kb on + strand at 498.728 kb on + strand, within Pf1N1B4_428 at 498.728 kb on + strand, within Pf1N1B4_428 at 498.728 kb on + strand, within Pf1N1B4_428 at 498.729 kb on - strand, within Pf1N1B4_428 at 498.729 kb on - strand at 498.729 kb on - strand, within Pf1N1B4_428 at 498.729 kb on - strand, within Pf1N1B4_428 at 498.742 kb on - strand, within Pf1N1B4_428 at 498.742 kb on - strand, within Pf1N1B4_428 at 498.762 kb on + strand, within Pf1N1B4_428 at 498.762 kb on + strand, within Pf1N1B4_428 at 498.762 kb on + strand, within Pf1N1B4_428 at 498.762 kb on + strand, within Pf1N1B4_428 at 498.763 kb on - strand, within Pf1N1B4_428 at 498.763 kb on - strand, within Pf1N1B4_428 at 498.774 kb on + strand, within Pf1N1B4_428 at 498.775 kb on - strand, within Pf1N1B4_428 at 498.775 kb on - strand, within Pf1N1B4_428 at 498.830 kb on + strand, within Pf1N1B4_428 at 498.918 kb on + strand, within Pf1N1B4_428 at 498.918 kb on + strand at 498.948 kb on + strand, within Pf1N1B4_428 at 498.948 kb on + strand, within Pf1N1B4_428 at 499.049 kb on + strand, within Pf1N1B4_428 at 499.049 kb on + strand, within Pf1N1B4_428 at 499.049 kb on + strand, within Pf1N1B4_428 at 499.049 kb on + strand, within Pf1N1B4_428 at 499.050 kb on - strand, within Pf1N1B4_428 at 499.050 kb on - strand at 499.051 kb on + strand, within Pf1N1B4_428 at 499.051 kb on + strand, within Pf1N1B4_428 at 499.051 kb on + strand, within Pf1N1B4_428 at 499.051 kb on + strand, within Pf1N1B4_428 at 499.052 kb on - strand, within Pf1N1B4_428 at 499.052 kb on - strand, within Pf1N1B4_428 at 499.052 kb on - strand, within Pf1N1B4_428 at 499.058 kb on + strand, within Pf1N1B4_428 at 499.064 kb on + strand at 499.065 kb on - strand at 499.065 kb on - strand at 499.065 kb on - strand at 499.068 kb on + strand at 499.068 kb on + strand at 499.068 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.071 kb on + strand at 499.079 kb on + strand at 499.191 kb on + strand at 499.627 kb on + strand, within Pf1N1B4_429 at 499.628 kb on - strand, within Pf1N1B4_429 at 499.655 kb on + strand, within Pf1N1B4_429 at 499.655 kb on + strand, within Pf1N1B4_429 at 499.655 kb on + strand, within Pf1N1B4_429 at 499.656 kb on - strand, within Pf1N1B4_429 at 499.737 kb on - strand at 499.750 kb on + strand at 499.750 kb on + strand at 499.763 kb on - strand at 499.788 kb on + strand at 499.789 kb on - strand at 499.789 kb on - strand at 499.863 kb on + strand at 499.903 kb on + strand at 499.903 kb on + strand at 499.904 kb on - strand at 499.904 kb on - strand at 499.962 kb on + strand at 499.962 kb on + strand at 499.962 kb on + strand at 499.962 kb on + strand at 499.963 kb on - strand at 499.972 kb on + strand at 500.094 kb on + strand at 500.094 kb on + strand at 500.094 kb on + strand at 500.095 kb on - strand at 500.095 kb on - strand at 500.104 kb on - strand at 500.111 kb on + strand at 500.129 kb on - strand at 500.235 kb on - strand at 500.338 kb on + strand at 500.386 kb on + strand, within Pf1N1B4_430 at 500.387 kb on - strand, within Pf1N1B4_430 at 500.387 kb on - strand, within Pf1N1B4_430 at 500.416 kb on - strand, within Pf1N1B4_430 at 500.416 kb on - strand, within Pf1N1B4_430 at 500.515 kb on + strand at 500.560 kb on + strand at 500.613 kb on + strand at 500.615 kb on + strand at 500.615 kb on + strand at 500.615 kb on + strand at 500.615 kb on + strand at 500.615 kb on + strand at 500.615 kb on + strand at 500.615 kb on + strand at 500.616 kb on - strand at 500.616 kb on - strand at 500.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 498,478 + +1.9 498,587 + Pf1N1B4_428 0.53 +2.2 498,587 + Pf1N1B4_428 0.53 -0.7 498,610 - Pf1N1B4_428 0.55 -0.2 498,635 + Pf1N1B4_428 0.57 -0.9 498,645 + Pf1N1B4_428 0.58 -0.4 498,646 - -0.1 498,646 - Pf1N1B4_428 0.58 +0.3 498,726 + Pf1N1B4_428 0.64 -0.1 498,726 + Pf1N1B4_428 0.64 +1.7 498,727 - Pf1N1B4_428 0.64 -0.2 498,727 - Pf1N1B4_428 0.64 -0.4 498,728 + +0.3 498,728 + Pf1N1B4_428 0.64 -0.3 498,728 + Pf1N1B4_428 0.64 -0.9 498,728 + Pf1N1B4_428 0.64 +1.1 498,729 - Pf1N1B4_428 0.64 -0.5 498,729 - -0.1 498,729 - Pf1N1B4_428 0.64 -0.9 498,729 - Pf1N1B4_428 0.64 -1.1 498,742 - Pf1N1B4_428 0.65 +0.1 498,742 - Pf1N1B4_428 0.65 -0.4 498,762 + Pf1N1B4_428 0.67 +0.2 498,762 + Pf1N1B4_428 0.67 -0.7 498,762 + Pf1N1B4_428 0.67 +0.1 498,762 + Pf1N1B4_428 0.67 +0.6 498,763 - Pf1N1B4_428 0.67 -0.5 498,763 - Pf1N1B4_428 0.67 +0.9 498,774 + Pf1N1B4_428 0.68 -1.9 498,775 - Pf1N1B4_428 0.68 -0.9 498,775 - Pf1N1B4_428 0.68 -1.1 498,830 + Pf1N1B4_428 0.72 -0.9 498,918 + Pf1N1B4_428 0.79 -1.4 498,918 + -0.7 498,948 + Pf1N1B4_428 0.81 +0.0 498,948 + Pf1N1B4_428 0.81 +0.9 499,049 + Pf1N1B4_428 0.89 +0.4 499,049 + Pf1N1B4_428 0.89 +1.9 499,049 + Pf1N1B4_428 0.89 +0.6 499,049 + Pf1N1B4_428 0.89 +1.2 499,050 - Pf1N1B4_428 0.89 -0.1 499,050 - +2.2 499,051 + Pf1N1B4_428 0.89 +1.6 499,051 + Pf1N1B4_428 0.89 +1.9 499,051 + Pf1N1B4_428 0.89 +1.3 499,051 + Pf1N1B4_428 0.89 -1.4 499,052 - Pf1N1B4_428 0.89 -1.7 499,052 - Pf1N1B4_428 0.89 +1.2 499,052 - Pf1N1B4_428 0.89 +0.1 499,058 + Pf1N1B4_428 0.90 -0.0 499,064 + -0.3 499,065 - -1.2 499,065 - +1.1 499,065 - -0.3 499,068 + +2.2 499,068 + -0.8 499,068 + -0.1 499,071 + -0.1 499,071 + -0.5 499,071 + +0.3 499,071 + +0.9 499,071 + +0.3 499,071 + -0.4 499,071 + +0.3 499,071 + -0.8 499,071 + -1.7 499,071 + +0.5 499,071 + -0.4 499,071 + +0.9 499,079 + +1.2 499,191 + -0.1 499,627 + Pf1N1B4_429 0.74 +0.6 499,628 - Pf1N1B4_429 0.75 +1.6 499,655 + Pf1N1B4_429 0.84 +0.1 499,655 + Pf1N1B4_429 0.84 +1.1 499,655 + Pf1N1B4_429 0.84 +0.9 499,656 - Pf1N1B4_429 0.84 -1.1 499,737 - -1.1 499,750 + -1.0 499,750 + -0.7 499,763 - +0.9 499,788 + -1.4 499,789 - +0.8 499,789 - -0.1 499,863 + +0.2 499,903 + +1.5 499,903 + +0.3 499,904 - -0.3 499,904 - -0.4 499,962 + +1.9 499,962 + +0.4 499,962 + -1.1 499,962 + -1.9 499,963 - +0.4 499,972 + +0.5 500,094 + -0.6 500,094 + -0.3 500,094 + +0.6 500,095 - +1.9 500,095 - +0.6 500,104 - -0.1 500,111 + +0.3 500,129 - -0.7 500,235 - -0.4 500,338 + -0.1 500,386 + Pf1N1B4_430 0.14 -0.1 500,387 - Pf1N1B4_430 0.15 +0.5 500,387 - Pf1N1B4_430 0.15 -0.1 500,416 - Pf1N1B4_430 0.39 -0.3 500,416 - Pf1N1B4_430 0.39 +0.9 500,515 + +1.5 500,560 + +0.9 500,613 + +0.3 500,615 + +0.4 500,615 + +0.6 500,615 + -1.3 500,615 + -0.1 500,615 + +1.9 500,615 + -1.9 500,615 + -1.4 500,616 - -0.5 500,616 - +0.0 500,616 - -0.1
Or see this region's nucleotide sequence