Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4035

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4034 and Pf1N1B4_4035 overlap by 4 nucleotidesPf1N1B4_4035 and Pf1N1B4_4036 overlap by 78 nucleotidesPf1N1B4_4036 and Pf1N1B4_4037 are separated by 328 nucleotides Pf1N1B4_4034 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 4,484,527 to 4,485,534 _4034 Pf1N1B4_4035 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 4,485,531 to 4,487,990 _4035 Pf1N1B4_4036 - hypothetical protein, at 4,487,913 to 4,488,056 _4036 Pf1N1B4_4037 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 4,488,385 to 4,489,740 _4037 Position (kb) 4485 4486 4487 4488Strain fitness (log2 ratio) -2 -1 0 1at 4484.807 kb on + strand, within Pf1N1B4_4034at 4485.124 kb on - strand, within Pf1N1B4_4034at 4485.503 kb on - strandat 4485.742 kb on + strandat 4485.743 kb on - strandat 4485.743 kb on - strandat 4485.743 kb on - strandat 4485.743 kb on - strandat 4486.005 kb on + strand, within Pf1N1B4_4035at 4487.245 kb on + strand, within Pf1N1B4_4035at 4487.246 kb on - strand, within Pf1N1B4_4035at 4487.468 kb on - strand, within Pf1N1B4_4035at 4487.707 kb on + strand, within Pf1N1B4_4035at 4487.708 kb on - strand, within Pf1N1B4_4035at 4487.756 kb on - strandat 4487.765 kb on - strandat 4488.152 kb on + strandat 4488.239 kb on - strandat 4488.330 kb on - strandat 4488.379 kb on - strandat 4488.379 kb on - strandat 4488.379 kb on - strandat 4488.471 kb on - strandat 4488.782 kb on + strand, within Pf1N1B4_4037at 4488.783 kb on - strand, within Pf1N1B4_4037at 4488.783 kb on - strand, within Pf1N1B4_4037

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,484,807 + Pf1N1B4_4034 0.28 +0.1
4,485,124 - Pf1N1B4_4034 0.59 -2.4
4,485,503 - -0.3
4,485,742 + -1.1
4,485,743 - +0.7
4,485,743 - +0.3
4,485,743 - -0.3
4,485,743 - -0.2
4,486,005 + Pf1N1B4_4035 0.19 -0.7
4,487,245 + Pf1N1B4_4035 0.70 +0.2
4,487,246 - Pf1N1B4_4035 0.70 -2.1
4,487,468 - Pf1N1B4_4035 0.79 -1.6
4,487,707 + Pf1N1B4_4035 0.88 -0.3
4,487,708 - Pf1N1B4_4035 0.88 -1.3
4,487,756 - -0.2
4,487,765 - -1.8
4,488,152 + +0.1
4,488,239 - -0.3
4,488,330 - -0.3
4,488,379 - +1.1
4,488,379 - -0.5
4,488,379 - -0.7
4,488,471 - -0.5
4,488,782 + Pf1N1B4_4037 0.29 -0.3
4,488,783 - Pf1N1B4_4037 0.29 -0.3
4,488,783 - Pf1N1B4_4037 0.29 -1.1

Or see this region's nucleotide sequence