Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3071 and Pf1N1B4_3072 overlap by 12 nucleotides Pf1N1B4_3072 and Pf1N1B4_3073 overlap by 4 nucleotides
Pf1N1B4_3071 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 3,452,973 to 3,454,124
_3071
Pf1N1B4_3072 - hypothetical protein, at 3,454,113 to 3,454,367
_3072
Pf1N1B4_3073 - probable glucosyl transferase, at 3,454,364 to 3,456,955
_3073
Position (kb)
3454
3455 Strain fitness (log2 ratio)
-2
-1
0
1 at 3454.127 kb on - strand at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.280 kb on - strand, within Pf1N1B4_3072 at 3454.282 kb on - strand, within Pf1N1B4_3072 at 3454.282 kb on - strand, within Pf1N1B4_3072 at 3454.315 kb on + strand, within Pf1N1B4_3072 at 3454.358 kb on - strand at 3454.358 kb on - strand at 3454.654 kb on - strand, within Pf1N1B4_3073 at 3455.013 kb on + strand, within Pf1N1B4_3073 at 3455.053 kb on + strand, within Pf1N1B4_3073 at 3455.088 kb on + strand at 3455.089 kb on - strand, within Pf1N1B4_3073 at 3455.271 kb on + strand, within Pf1N1B4_3073 at 3455.272 kb on - strand, within Pf1N1B4_3073
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,454,127 - -0.9 3,454,280 - Pf1N1B4_3072 0.65 -0.1 3,454,280 - Pf1N1B4_3072 0.65 -0.7 3,454,280 - Pf1N1B4_3072 0.65 -1.3 3,454,280 - -0.9 3,454,280 - Pf1N1B4_3072 0.65 +0.1 3,454,280 - Pf1N1B4_3072 0.65 -1.5 3,454,280 - Pf1N1B4_3072 0.65 +1.3 3,454,280 - -0.9 3,454,280 - Pf1N1B4_3072 0.65 -0.2 3,454,280 - Pf1N1B4_3072 0.65 -1.9 3,454,280 - Pf1N1B4_3072 0.65 +0.1 3,454,280 - Pf1N1B4_3072 0.65 +0.1 3,454,282 - Pf1N1B4_3072 0.66 -1.4 3,454,282 - Pf1N1B4_3072 0.66 -1.4 3,454,315 + Pf1N1B4_3072 0.79 -0.5 3,454,358 - +0.3 3,454,358 - +1.1 3,454,654 - Pf1N1B4_3073 0.11 -0.9 3,455,013 + Pf1N1B4_3073 0.25 +0.6 3,455,053 + Pf1N1B4_3073 0.27 -0.9 3,455,088 + +1.1 3,455,089 - Pf1N1B4_3073 0.28 -0.3 3,455,271 + Pf1N1B4_3073 0.35 -0.9 3,455,272 - Pf1N1B4_3073 0.35 -1.5
Or see this region's nucleotide sequence