Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3072

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3071 and Pf1N1B4_3072 overlap by 12 nucleotidesPf1N1B4_3072 and Pf1N1B4_3073 overlap by 4 nucleotides Pf1N1B4_3071 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 3,452,973 to 3,454,124 _3071 Pf1N1B4_3072 - hypothetical protein, at 3,454,113 to 3,454,367 _3072 Pf1N1B4_3073 - probable glucosyl transferase, at 3,454,364 to 3,456,955 _3073 Position (kb) 3454 3455Strain fitness (log2 ratio) -2 -1 0 1at 3454.127 kb on - strandat 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strandat 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strandat 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.280 kb on - strand, within Pf1N1B4_3072at 3454.282 kb on - strand, within Pf1N1B4_3072at 3454.282 kb on - strand, within Pf1N1B4_3072at 3454.315 kb on + strand, within Pf1N1B4_3072at 3454.358 kb on - strandat 3454.358 kb on - strandat 3454.654 kb on - strand, within Pf1N1B4_3073at 3455.013 kb on + strand, within Pf1N1B4_3073at 3455.053 kb on + strand, within Pf1N1B4_3073at 3455.088 kb on + strandat 3455.089 kb on - strand, within Pf1N1B4_3073at 3455.271 kb on + strand, within Pf1N1B4_3073at 3455.272 kb on - strand, within Pf1N1B4_3073

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,454,127 - -0.9
3,454,280 - Pf1N1B4_3072 0.65 -0.1
3,454,280 - Pf1N1B4_3072 0.65 -0.7
3,454,280 - Pf1N1B4_3072 0.65 -1.3
3,454,280 - -0.9
3,454,280 - Pf1N1B4_3072 0.65 +0.1
3,454,280 - Pf1N1B4_3072 0.65 -1.5
3,454,280 - Pf1N1B4_3072 0.65 +1.3
3,454,280 - -0.9
3,454,280 - Pf1N1B4_3072 0.65 -0.2
3,454,280 - Pf1N1B4_3072 0.65 -1.9
3,454,280 - Pf1N1B4_3072 0.65 +0.1
3,454,280 - Pf1N1B4_3072 0.65 +0.1
3,454,282 - Pf1N1B4_3072 0.66 -1.4
3,454,282 - Pf1N1B4_3072 0.66 -1.4
3,454,315 + Pf1N1B4_3072 0.79 -0.5
3,454,358 - +0.3
3,454,358 - +1.1
3,454,654 - Pf1N1B4_3073 0.11 -0.9
3,455,013 + Pf1N1B4_3073 0.25 +0.6
3,455,053 + Pf1N1B4_3073 0.27 -0.9
3,455,088 + +1.1
3,455,089 - Pf1N1B4_3073 0.28 -0.3
3,455,271 + Pf1N1B4_3073 0.35 -0.9
3,455,272 - Pf1N1B4_3073 0.35 -1.5

Or see this region's nucleotide sequence