Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2807

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2805 and Pf1N1B4_2806 overlap by 8 nucleotidesPf1N1B4_2806 and Pf1N1B4_2807 overlap by 8 nucleotidesPf1N1B4_2807 and Pf1N1B4_2808 are separated by 192 nucleotides Pf1N1B4_2805 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 3,148,257 to 3,151,088 _2805 Pf1N1B4_2806 - Lipoprotein signal peptidase (EC 3.4.23.36), at 3,151,081 to 3,151,593 _2806 Pf1N1B4_2807 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 3,151,586 to 3,152,038 _2807 Pf1N1B4_2808 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 3,152,231 to 3,153,178 _2808 Position (kb) 3151 3152 3153Strain fitness (log2 ratio) -1 0 1at 3151.551 kb on + strandat 3151.551 kb on + strandat 3151.551 kb on + strandat 3151.551 kb on + strandat 3151.551 kb on + strandat 3151.599 kb on + strandat 3151.599 kb on + strandat 3151.599 kb on + strandat 3151.599 kb on + strandat 3151.599 kb on + strandat 3151.599 kb on + strandat 3151.600 kb on - strandat 3151.684 kb on + strand, within Pf1N1B4_2807at 3151.684 kb on + strand, within Pf1N1B4_2807at 3151.684 kb on + strand, within Pf1N1B4_2807at 3151.685 kb on - strand, within Pf1N1B4_2807at 3151.685 kb on - strandat 3151.861 kb on + strand, within Pf1N1B4_2807at 3151.915 kb on + strand, within Pf1N1B4_2807at 3151.990 kb on + strand, within Pf1N1B4_2807at 3152.108 kb on + strandat 3152.108 kb on + strandat 3152.149 kb on + strandat 3152.197 kb on + strandat 3152.200 kb on + strandat 3152.200 kb on + strandat 3152.200 kb on + strandat 3152.200 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,151,551 + +0.2
3,151,551 + -0.1
3,151,551 + +0.2
3,151,551 + -0.3
3,151,551 + +0.0
3,151,599 + +0.5
3,151,599 + +0.7
3,151,599 + +0.2
3,151,599 + -0.8
3,151,599 + +0.2
3,151,599 + -0.8
3,151,600 - +1.5
3,151,684 + Pf1N1B4_2807 0.22 -0.7
3,151,684 + Pf1N1B4_2807 0.22 -1.4
3,151,684 + Pf1N1B4_2807 0.22 +0.2
3,151,685 - Pf1N1B4_2807 0.22 -1.4
3,151,685 - +0.6
3,151,861 + Pf1N1B4_2807 0.61 -1.1
3,151,915 + Pf1N1B4_2807 0.73 +1.6
3,151,990 + Pf1N1B4_2807 0.89 -1.1
3,152,108 + +0.2
3,152,108 + +0.6
3,152,149 + +0.4
3,152,197 + +0.3
3,152,200 + +0.0
3,152,200 + +0.1
3,152,200 + -0.0
3,152,200 + -0.6

Or see this region's nucleotide sequence