Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2688

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_2687 and Pf1N1B4_2688 are separated by 213 nucleotidesPf1N1B4_2688 and Pf1N1B4_2689 are separated by 1 nucleotidesPf1N1B4_2689 and Pf1N1B4_2690 are separated by 72 nucleotides Pf1N1B4_2687 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 3,024,268 to 3,024,966 _2687 Pf1N1B4_2688 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 3,025,180 to 3,026,427 _2688 Pf1N1B4_2689 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 3,026,429 to 3,027,118 _2689 Pf1N1B4_2690 - Iojap protein, at 3,027,191 to 3,027,685 _2690 Position (kb) 3025 3026 3027Strain fitness (log2 ratio) -1 0 1 2 3at 3024.207 kb on + strandat 3024.207 kb on + strandat 3024.208 kb on - strandat 3024.208 kb on - strandat 3024.208 kb on - strandat 3024.208 kb on - strandat 3024.332 kb on + strandat 3024.362 kb on + strand, within Pf1N1B4_2687at 3024.363 kb on - strand, within Pf1N1B4_2687at 3024.650 kb on - strand, within Pf1N1B4_2687at 3024.704 kb on + strand, within Pf1N1B4_2687at 3024.707 kb on + strand, within Pf1N1B4_2687at 3024.707 kb on + strand, within Pf1N1B4_2687at 3024.707 kb on + strand, within Pf1N1B4_2687at 3024.707 kb on + strand, within Pf1N1B4_2687at 3024.707 kb on + strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.708 kb on - strand, within Pf1N1B4_2687at 3024.711 kb on + strand, within Pf1N1B4_2687at 3024.711 kb on + strand, within Pf1N1B4_2687at 3024.711 kb on + strand, within Pf1N1B4_2687at 3024.711 kb on + strandat 3024.712 kb on - strand, within Pf1N1B4_2687at 3024.712 kb on - strand, within Pf1N1B4_2687at 3024.712 kb on - strand, within Pf1N1B4_2687at 3024.712 kb on - strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.713 kb on + strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strandat 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strandat 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.714 kb on - strand, within Pf1N1B4_2687at 3024.744 kb on + strand, within Pf1N1B4_2687at 3024.794 kb on + strand, within Pf1N1B4_2687at 3024.862 kb on - strand, within Pf1N1B4_2687at 3025.012 kb on + strandat 3025.022 kb on - strandat 3025.022 kb on - strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.102 kb on + strandat 3025.104 kb on + strandat 3025.117 kb on + strandat 3025.135 kb on + strandat 3025.135 kb on + strandat 3025.531 kb on + strand, within Pf1N1B4_2688at 3025.753 kb on + strand, within Pf1N1B4_2688at 3025.858 kb on + strand, within Pf1N1B4_2688at 3025.858 kb on + strand, within Pf1N1B4_2688at 3025.858 kb on + strand, within Pf1N1B4_2688at 3025.918 kb on + strand, within Pf1N1B4_2688at 3026.043 kb on + strandat 3026.098 kb on + strand, within Pf1N1B4_2688at 3026.157 kb on + strand, within Pf1N1B4_2688at 3026.157 kb on + strand, within Pf1N1B4_2688at 3026.157 kb on + strand, within Pf1N1B4_2688at 3026.160 kb on + strand, within Pf1N1B4_2688at 3026.262 kb on + strand, within Pf1N1B4_2688at 3026.322 kb on + strandat 3026.380 kb on + strandat 3026.380 kb on + strandat 3026.380 kb on + strandat 3026.380 kb on + strandat 3026.380 kb on + strandat 3027.152 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,024,207 + -0.3
3,024,207 + +1.2
3,024,208 - +0.9
3,024,208 - +0.4
3,024,208 - +1.1
3,024,208 - +0.2
3,024,332 + +0.0
3,024,362 + Pf1N1B4_2687 0.13 +1.2
3,024,363 - Pf1N1B4_2687 0.14 +0.8
3,024,650 - Pf1N1B4_2687 0.55 +0.7
3,024,704 + Pf1N1B4_2687 0.62 +0.0
3,024,707 + Pf1N1B4_2687 0.63 -0.1
3,024,707 + Pf1N1B4_2687 0.63 -0.1
3,024,707 + Pf1N1B4_2687 0.63 +0.2
3,024,707 + Pf1N1B4_2687 0.63 +0.2
3,024,707 + Pf1N1B4_2687 0.63 -0.8
3,024,708 - Pf1N1B4_2687 0.63 -0.3
3,024,708 - Pf1N1B4_2687 0.63 +1.4
3,024,708 - Pf1N1B4_2687 0.63 +1.2
3,024,708 - Pf1N1B4_2687 0.63 +1.6
3,024,708 - Pf1N1B4_2687 0.63 +0.2
3,024,708 - Pf1N1B4_2687 0.63 +0.8
3,024,708 - Pf1N1B4_2687 0.63 +1.2
3,024,708 - Pf1N1B4_2687 0.63 -0.4
3,024,708 - Pf1N1B4_2687 0.63 +3.1
3,024,708 - Pf1N1B4_2687 0.63 +0.2
3,024,711 + Pf1N1B4_2687 0.63 -0.2
3,024,711 + Pf1N1B4_2687 0.63 +0.7
3,024,711 + Pf1N1B4_2687 0.63 -0.1
3,024,711 + -0.3
3,024,712 - Pf1N1B4_2687 0.64 +0.2
3,024,712 - Pf1N1B4_2687 0.64 +0.7
3,024,712 - Pf1N1B4_2687 0.64 -0.2
3,024,712 - Pf1N1B4_2687 0.64 -0.8
3,024,713 + Pf1N1B4_2687 0.64 +0.7
3,024,713 + Pf1N1B4_2687 0.64 +0.2
3,024,713 + Pf1N1B4_2687 0.64 +0.2
3,024,713 + Pf1N1B4_2687 0.64 -0.8
3,024,713 + Pf1N1B4_2687 0.64 +1.0
3,024,713 + Pf1N1B4_2687 0.64 +2.0
3,024,713 + Pf1N1B4_2687 0.64 -0.8
3,024,713 + Pf1N1B4_2687 0.64 -0.0
3,024,713 + Pf1N1B4_2687 0.64 -0.3
3,024,713 + Pf1N1B4_2687 0.64 -0.2
3,024,713 + Pf1N1B4_2687 0.64 +0.6
3,024,713 + Pf1N1B4_2687 0.64 +0.2
3,024,713 + Pf1N1B4_2687 0.64 +0.2
3,024,714 - Pf1N1B4_2687 0.64 +0.0
3,024,714 - +0.7
3,024,714 - Pf1N1B4_2687 0.64 -1.0
3,024,714 - +2.2
3,024,714 - Pf1N1B4_2687 0.64 -0.5
3,024,714 - Pf1N1B4_2687 0.64 +0.8
3,024,714 - Pf1N1B4_2687 0.64 +0.2
3,024,714 - Pf1N1B4_2687 0.64 +2.1
3,024,714 - Pf1N1B4_2687 0.64 -0.3
3,024,714 - Pf1N1B4_2687 0.64 +0.2
3,024,714 - Pf1N1B4_2687 0.64 +0.2
3,024,714 - Pf1N1B4_2687 0.64 +0.2
3,024,714 - Pf1N1B4_2687 0.64 +0.2
3,024,714 - Pf1N1B4_2687 0.64 +1.0
3,024,714 - Pf1N1B4_2687 0.64 +1.2
3,024,714 - Pf1N1B4_2687 0.64 +0.0
3,024,744 + Pf1N1B4_2687 0.68 +0.1
3,024,794 + Pf1N1B4_2687 0.75 +0.2
3,024,862 - Pf1N1B4_2687 0.85 +0.2
3,025,012 + +1.2
3,025,022 - +1.2
3,025,022 - -0.8
3,025,102 + -0.4
3,025,102 + -1.1
3,025,102 + -1.6
3,025,102 + -0.2
3,025,102 + -1.1
3,025,102 + +1.1
3,025,102 + -0.1
3,025,102 + -1.2
3,025,102 + +1.2
3,025,102 + -0.3
3,025,104 + +1.8
3,025,117 + -1.3
3,025,135 + +0.2
3,025,135 + +0.7
3,025,531 + Pf1N1B4_2688 0.28 -0.8
3,025,753 + Pf1N1B4_2688 0.46 -1.1
3,025,858 + Pf1N1B4_2688 0.54 -0.5
3,025,858 + Pf1N1B4_2688 0.54 -0.1
3,025,858 + Pf1N1B4_2688 0.54 -1.1
3,025,918 + Pf1N1B4_2688 0.59 +2.2
3,026,043 + +1.2
3,026,098 + Pf1N1B4_2688 0.74 -1.6
3,026,157 + Pf1N1B4_2688 0.78 -0.6
3,026,157 + Pf1N1B4_2688 0.78 -0.1
3,026,157 + Pf1N1B4_2688 0.78 -0.3
3,026,160 + Pf1N1B4_2688 0.79 +0.2
3,026,262 + Pf1N1B4_2688 0.87 +0.8
3,026,322 + -0.6
3,026,380 + +0.8
3,026,380 + -0.8
3,026,380 + +0.1
3,026,380 + +1.7
3,026,380 + +1.2
3,027,152 + -0.6

Or see this region's nucleotide sequence