Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2634 and Pf1N1B4_2635 are separated by 69 nucleotides Pf1N1B4_2635 and Pf1N1B4_2636 are separated by 175 nucleotides Pf1N1B4_2636 and Pf1N1B4_2637 are separated by 32 nucleotides Pf1N1B4_2637 and Pf1N1B4_2638 overlap by 8 nucleotides
Pf1N1B4_2634 - Lhr-like helicases, at 2,972,638 to 2,976,840
_2634
Pf1N1B4_2635 - hypothetical protein, at 2,976,910 to 2,977,119
_2635
Pf1N1B4_2636 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 2,977,295 to 2,977,411
_2636
Pf1N1B4_2637 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 2,977,444 to 2,978,163
_2637
Pf1N1B4_2638 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 2,978,156 to 2,979,085
_2638
Position (kb)
2977
2978 Strain fitness (log2 ratio)
-1
0
1
2 at 2976.488 kb on + strand at 2976.488 kb on + strand at 2976.489 kb on - strand at 2976.489 kb on - strand at 2976.489 kb on - strand at 2976.489 kb on - strand at 2976.489 kb on - strand at 2976.882 kb on + strand at 2976.965 kb on - strand, within Pf1N1B4_2635 at 2976.965 kb on - strand, within Pf1N1B4_2635 at 2976.965 kb on - strand, within Pf1N1B4_2635 at 2976.965 kb on - strand, within Pf1N1B4_2635 at 2976.992 kb on + strand, within Pf1N1B4_2635 at 2977.073 kb on - strand, within Pf1N1B4_2635 at 2977.073 kb on - strand, within Pf1N1B4_2635 at 2977.127 kb on - strand at 2977.152 kb on + strand at 2977.153 kb on - strand at 2977.153 kb on - strand at 2977.153 kb on - strand at 2977.153 kb on - strand at 2977.153 kb on - strand at 2977.153 kb on - strand at 2977.153 kb on - strand at 2977.153 kb on - strand at 2977.153 kb on - strand at 2977.160 kb on - strand at 2977.210 kb on + strand at 2977.279 kb on + strand at 2977.279 kb on + strand at 2977.279 kb on + strand at 2977.279 kb on + strand at 2977.279 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.294 kb on + strand at 2977.299 kb on + strand at 2977.299 kb on + strand at 2977.299 kb on + strand at 2977.459 kb on + strand at 2977.459 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.462 kb on + strand at 2977.585 kb on + strand, within Pf1N1B4_2637 at 2977.618 kb on + strand, within Pf1N1B4_2637 at 2977.618 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2977.909 kb on + strand, within Pf1N1B4_2637 at 2978.135 kb on + strand at 2978.142 kb on + strand at 2978.142 kb on + strand at 2978.149 kb on + strand at 2978.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,976,488 + -0.7 2,976,488 + +0.8 2,976,489 - +0.9 2,976,489 - -0.3 2,976,489 - +0.8 2,976,489 - +1.6 2,976,489 - +0.8 2,976,882 + +0.8 2,976,965 - Pf1N1B4_2635 0.26 +1.6 2,976,965 - Pf1N1B4_2635 0.26 +1.0 2,976,965 - Pf1N1B4_2635 0.26 +0.3 2,976,965 - Pf1N1B4_2635 0.26 +1.3 2,976,992 + Pf1N1B4_2635 0.39 +1.3 2,977,073 - Pf1N1B4_2635 0.78 +0.5 2,977,073 - Pf1N1B4_2635 0.78 -1.1 2,977,127 - +0.0 2,977,152 + -0.0 2,977,153 - +0.0 2,977,153 - +1.3 2,977,153 - -0.6 2,977,153 - +0.2 2,977,153 - +0.6 2,977,153 - -0.2 2,977,153 - +1.0 2,977,153 - +0.6 2,977,153 - -0.5 2,977,160 - -0.2 2,977,210 + +1.1 2,977,279 + +0.3 2,977,279 + +0.9 2,977,279 + -1.1 2,977,279 + +0.1 2,977,279 + +0.8 2,977,294 + +0.1 2,977,294 + +1.0 2,977,294 + +0.0 2,977,294 + -0.2 2,977,294 + -0.1 2,977,294 + +0.4 2,977,294 + +0.6 2,977,294 + +0.2 2,977,294 + -0.1 2,977,294 + -0.7 2,977,294 + +0.3 2,977,294 + -0.1 2,977,294 + +0.3 2,977,294 + -1.0 2,977,294 + -0.9 2,977,294 + +0.5 2,977,294 + +0.8 2,977,294 + +1.8 2,977,294 + +0.8 2,977,294 + +0.7 2,977,294 + +0.8 2,977,294 + -0.7 2,977,294 + +1.7 2,977,294 + -0.1 2,977,294 + -0.7 2,977,294 + +0.3 2,977,294 + -0.7 2,977,294 + -0.1 2,977,294 + +1.3 2,977,294 + -0.1 2,977,299 + -0.1 2,977,299 + -0.6 2,977,299 + +0.8 2,977,459 + +1.3 2,977,459 + +0.4 2,977,462 + +0.3 2,977,462 + +0.8 2,977,462 + +0.3 2,977,462 + +0.3 2,977,462 + +0.8 2,977,462 + -1.1 2,977,462 + -0.3 2,977,462 + +1.3 2,977,462 + +0.8 2,977,462 + +1.1 2,977,462 + +1.0 2,977,462 + +0.3 2,977,462 + -0.1 2,977,462 + -0.2 2,977,462 + +0.0 2,977,462 + +0.3 2,977,462 + +0.5 2,977,462 + +0.8 2,977,585 + Pf1N1B4_2637 0.20 +0.3 2,977,618 + Pf1N1B4_2637 0.24 -1.1 2,977,618 + Pf1N1B4_2637 0.24 +0.5 2,977,909 + Pf1N1B4_2637 0.65 +0.7 2,977,909 + Pf1N1B4_2637 0.65 +1.4 2,977,909 + Pf1N1B4_2637 0.65 +0.8 2,977,909 + Pf1N1B4_2637 0.65 +0.6 2,977,909 + Pf1N1B4_2637 0.65 +0.3 2,977,909 + Pf1N1B4_2637 0.65 +1.4 2,977,909 + Pf1N1B4_2637 0.65 +1.5 2,977,909 + Pf1N1B4_2637 0.65 -1.5 2,977,909 + Pf1N1B4_2637 0.65 +0.3 2,977,909 + Pf1N1B4_2637 0.65 +1.3 2,977,909 + Pf1N1B4_2637 0.65 +0.8 2,977,909 + +1.7 2,977,909 + Pf1N1B4_2637 0.65 -1.3 2,977,909 + Pf1N1B4_2637 0.65 +0.3 2,977,909 + Pf1N1B4_2637 0.65 -0.2 2,977,909 + Pf1N1B4_2637 0.65 +1.1 2,977,909 + Pf1N1B4_2637 0.65 +1.3 2,977,909 + Pf1N1B4_2637 0.65 +0.5 2,977,909 + Pf1N1B4_2637 0.65 -0.2 2,977,909 + Pf1N1B4_2637 0.65 +0.5 2,978,135 + +1.3 2,978,142 + +0.7 2,978,142 + -0.5 2,978,149 + -0.6 2,978,149 + +0.2
Or see this region's nucleotide sequence