Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_193

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_192 and Pf1N1B4_193 are separated by 205 nucleotidesPf1N1B4_193 and Pf1N1B4_194 are separated by 101 nucleotidesPf1N1B4_194 and Pf1N1B4_195 are separated by 223 nucleotides Pf1N1B4_192 - Cysteine desulfurase (EC 2.8.1.7), at 241,196 to 242,362 _192 Pf1N1B4_193 - Transporter, LysE family, at 242,568 to 243,182 _193 Pf1N1B4_194 - ABC-type proline/glycine betaine transport systems, ATPase components, at 243,284 to 243,553 _194 Pf1N1B4_195 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 243,777 to 244,235 _195 Position (kb) 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 241.710 kb on + strand, within Pf1N1B4_192at 241.710 kb on + strand, within Pf1N1B4_192at 241.710 kb on + strand, within Pf1N1B4_192at 241.711 kb on - strand, within Pf1N1B4_192at 241.711 kb on - strand, within Pf1N1B4_192at 241.711 kb on - strand, within Pf1N1B4_192at 241.711 kb on - strand, within Pf1N1B4_192at 241.711 kb on - strand, within Pf1N1B4_192at 241.964 kb on - strand, within Pf1N1B4_192at 241.964 kb on - strand, within Pf1N1B4_192at 241.992 kb on + strandat 241.992 kb on + strand, within Pf1N1B4_192at 241.992 kb on + strandat 241.993 kb on - strandat 241.993 kb on - strand, within Pf1N1B4_192at 241.993 kb on - strand, within Pf1N1B4_192at 241.993 kb on - strandat 241.993 kb on - strand, within Pf1N1B4_192at 241.993 kb on - strand, within Pf1N1B4_192at 242.344 kb on - strandat 242.344 kb on - strandat 242.363 kb on - strandat 242.462 kb on + strandat 242.462 kb on + strandat 242.463 kb on - strandat 242.501 kb on - strandat 242.510 kb on + strandat 242.534 kb on + strandat 242.534 kb on + strandat 242.761 kb on + strand, within Pf1N1B4_193at 242.779 kb on + strand, within Pf1N1B4_193at 242.851 kb on + strand, within Pf1N1B4_193at 242.851 kb on + strand, within Pf1N1B4_193at 242.852 kb on - strand, within Pf1N1B4_193at 242.852 kb on - strand, within Pf1N1B4_193at 242.932 kb on + strand, within Pf1N1B4_193at 242.932 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.963 kb on - strand, within Pf1N1B4_193at 242.963 kb on - strand, within Pf1N1B4_193at 242.963 kb on - strand, within Pf1N1B4_193at 242.963 kb on - strand, within Pf1N1B4_193at 242.974 kb on + strand, within Pf1N1B4_193at 242.974 kb on + strand, within Pf1N1B4_193at 242.974 kb on + strand, within Pf1N1B4_193at 242.975 kb on - strand, within Pf1N1B4_193at 243.211 kb on + strandat 243.212 kb on - strandat 243.272 kb on + strandat 243.308 kb on + strandat 243.309 kb on - strandat 243.396 kb on + strand, within Pf1N1B4_194at 243.465 kb on + strand, within Pf1N1B4_194at 243.466 kb on - strand, within Pf1N1B4_194at 243.466 kb on - strand, within Pf1N1B4_194at 243.617 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.715 kb on + strandat 243.715 kb on + strandat 243.715 kb on + strandat 243.715 kb on + strandat 243.715 kb on + strandat 243.719 kb on + strandat 243.719 kb on + strandat 243.784 kb on + strandat 243.804 kb on + strandat 243.822 kb on + strandat 243.826 kb on + strand, within Pf1N1B4_195at 243.826 kb on + strand, within Pf1N1B4_195at 243.938 kb on + strand, within Pf1N1B4_195at 243.938 kb on + strand, within Pf1N1B4_195at 243.939 kb on - strand, within Pf1N1B4_195at 244.029 kb on + strand, within Pf1N1B4_195at 244.029 kb on + strand, within Pf1N1B4_195at 244.029 kb on + strand, within Pf1N1B4_195at 244.029 kb on + strand, within Pf1N1B4_195at 244.030 kb on - strand, within Pf1N1B4_195at 244.030 kb on - strand, within Pf1N1B4_195at 244.030 kb on - strand, within Pf1N1B4_195at 244.030 kb on - strand, within Pf1N1B4_195at 244.055 kb on + strand, within Pf1N1B4_195at 244.111 kb on - strand, within Pf1N1B4_195at 244.153 kb on + strand, within Pf1N1B4_195at 244.153 kb on + strandat 244.153 kb on + strand, within Pf1N1B4_195at 244.153 kb on + strandat 244.153 kb on + strand, within Pf1N1B4_195at 244.153 kb on + strand, within Pf1N1B4_195at 244.153 kb on + strand, within Pf1N1B4_195at 244.154 kb on - strand, within Pf1N1B4_195at 244.154 kb on - strand, within Pf1N1B4_195

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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241,710 + Pf1N1B4_192 0.44 -1.6
241,710 + Pf1N1B4_192 0.44 +0.3
241,710 + Pf1N1B4_192 0.44 +0.8
241,711 - Pf1N1B4_192 0.44 -0.1
241,711 - Pf1N1B4_192 0.44 +1.3
241,711 - Pf1N1B4_192 0.44 -0.4
241,711 - Pf1N1B4_192 0.44 +1.5
241,711 - Pf1N1B4_192 0.44 +0.1
241,964 - Pf1N1B4_192 0.66 -0.2
241,964 - Pf1N1B4_192 0.66 +0.6
241,992 + -0.8
241,992 + Pf1N1B4_192 0.68 -0.2
241,992 + +0.2
241,993 - -0.2
241,993 - Pf1N1B4_192 0.68 -0.1
241,993 - Pf1N1B4_192 0.68 +1.3
241,993 - -0.8
241,993 - Pf1N1B4_192 0.68 +0.9
241,993 - Pf1N1B4_192 0.68 +0.2
242,344 - -0.8
242,344 - -1.8
242,363 - -0.4
242,462 + +0.3
242,462 + -0.2
242,463 - +0.0
242,501 - -0.5
242,510 + +0.8
242,534 + -0.2
242,534 + +1.3
242,761 + Pf1N1B4_193 0.31 +2.2
242,779 + Pf1N1B4_193 0.34 +0.2
242,851 + Pf1N1B4_193 0.46 -1.6
242,851 + Pf1N1B4_193 0.46 -0.8
242,852 - Pf1N1B4_193 0.46 -0.2
242,852 - Pf1N1B4_193 0.46 -0.8
242,932 + Pf1N1B4_193 0.59 -0.2
242,932 + Pf1N1B4_193 0.59 -1.2
242,962 + Pf1N1B4_193 0.64 +0.8
242,962 + Pf1N1B4_193 0.64 -1.2
242,962 + Pf1N1B4_193 0.64 -0.5
242,962 + Pf1N1B4_193 0.64 -0.6
242,962 + Pf1N1B4_193 0.64 -1.6
242,963 - Pf1N1B4_193 0.64 +1.2
242,963 - Pf1N1B4_193 0.64 -0.6
242,963 - Pf1N1B4_193 0.64 -0.6
242,963 - Pf1N1B4_193 0.64 +1.1
242,974 + Pf1N1B4_193 0.66 -1.6
242,974 + Pf1N1B4_193 0.66 -1.6
242,974 + Pf1N1B4_193 0.66 -0.8
242,975 - Pf1N1B4_193 0.66 -0.2
243,211 + -0.1
243,212 - -1.0
243,272 + -0.2
243,308 + +1.3
243,309 - +0.2
243,396 + Pf1N1B4_194 0.41 +0.8
243,465 + Pf1N1B4_194 0.67 +0.0
243,466 - Pf1N1B4_194 0.67 +1.3
243,466 - Pf1N1B4_194 0.67 -1.0
243,617 + -0.6
243,713 + -0.9
243,713 + +0.0
243,713 + -2.6
243,713 + +0.8
243,713 + +0.2
243,713 + -0.0
243,713 + -0.4
243,715 + -0.2
243,715 + -0.6
243,715 + -0.6
243,715 + -0.7
243,715 + -1.2
243,719 + +0.0
243,719 + +0.3
243,784 + +1.6
243,804 + -1.1
243,822 + -0.5
243,826 + Pf1N1B4_195 0.11 -0.2
243,826 + Pf1N1B4_195 0.11 -1.8
243,938 + Pf1N1B4_195 0.35 +0.2
243,938 + Pf1N1B4_195 0.35 -1.6
243,939 - Pf1N1B4_195 0.35 +0.9
244,029 + Pf1N1B4_195 0.55 +0.8
244,029 + Pf1N1B4_195 0.55 +0.5
244,029 + Pf1N1B4_195 0.55 +0.9
244,029 + Pf1N1B4_195 0.55 +0.0
244,030 - Pf1N1B4_195 0.55 -0.6
244,030 - Pf1N1B4_195 0.55 +0.2
244,030 - Pf1N1B4_195 0.55 -0.1
244,030 - Pf1N1B4_195 0.55 -1.2
244,055 + Pf1N1B4_195 0.61 +0.2
244,111 - Pf1N1B4_195 0.73 -1.0
244,153 + Pf1N1B4_195 0.82 -1.5
244,153 + -0.8
244,153 + Pf1N1B4_195 0.82 +1.2
244,153 + +0.8
244,153 + Pf1N1B4_195 0.82 -0.7
244,153 + Pf1N1B4_195 0.82 -0.2
244,153 + Pf1N1B4_195 0.82 -0.2
244,154 - Pf1N1B4_195 0.82 -1.2
244,154 - Pf1N1B4_195 0.82 +0.3

Or see this region's nucleotide sequence