Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1753 and Pf1N1B4_1754 are separated by 22 nucleotides Pf1N1B4_1754 and Pf1N1B4_1755 are separated by 120 nucleotides Pf1N1B4_1755 and Pf1N1B4_1756 overlap by 13 nucleotides Pf1N1B4_1756 and Pf1N1B4_1757 overlap by 4 nucleotides
Pf1N1B4_1753 - Putative membrane-bound ClpP-class protease associated with aq_911, at 2,002,608 to 2,003,135
_1753
Pf1N1B4_1754 - Putative stomatin/prohibitin-family membrane protease subunit aq_911, at 2,003,158 to 2,003,916
_1754
Pf1N1B4_1755 - FIG00955799: hypothetical protein, at 2,004,037 to 2,004,981
_1755
Pf1N1B4_1756 - Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases, at 2,004,969 to 2,005,754
_1756
Pf1N1B4_1757 - Adenylylsulfate kinase (EC 2.7.1.25), at 2,005,751 to 2,006,356
_1757
Position (kb)
2004
2005 Strain fitness (log2 ratio)
-2
-1
0
1 at 2003.095 kb on + strand at 2003.095 kb on + strand at 2003.095 kb on + strand at 2003.095 kb on + strand at 2003.096 kb on - strand at 2003.096 kb on - strand at 2003.096 kb on - strand at 2003.153 kb on + strand at 2003.153 kb on + strand at 2003.153 kb on + strand at 2003.154 kb on - strand at 2003.154 kb on - strand at 2003.154 kb on - strand at 2003.192 kb on + strand at 2003.192 kb on + strand at 2003.193 kb on - strand at 2003.239 kb on + strand, within Pf1N1B4_1754 at 2003.346 kb on + strand, within Pf1N1B4_1754 at 2003.363 kb on + strand, within Pf1N1B4_1754 at 2003.422 kb on + strand, within Pf1N1B4_1754 at 2003.422 kb on + strand, within Pf1N1B4_1754 at 2003.422 kb on + strand, within Pf1N1B4_1754 at 2003.422 kb on + strand, within Pf1N1B4_1754 at 2003.422 kb on + strand, within Pf1N1B4_1754 at 2003.809 kb on + strand, within Pf1N1B4_1754 at 2003.809 kb on + strand, within Pf1N1B4_1754 at 2003.809 kb on + strand, within Pf1N1B4_1754 at 2003.809 kb on + strand, within Pf1N1B4_1754 at 2003.810 kb on - strand, within Pf1N1B4_1754 at 2003.810 kb on - strand, within Pf1N1B4_1754 at 2003.972 kb on + strand at 2004.041 kb on - strand at 2004.066 kb on + strand at 2004.066 kb on + strand at 2004.066 kb on + strand at 2004.067 kb on - strand at 2004.067 kb on - strand at 2004.068 kb on + strand at 2004.068 kb on + strand at 2004.068 kb on + strand at 2004.068 kb on + strand at 2004.068 kb on + strand at 2004.069 kb on - strand at 2004.069 kb on - strand at 2004.069 kb on - strand at 2004.069 kb on - strand at 2004.069 kb on - strand at 2004.069 kb on - strand at 2004.091 kb on + strand at 2004.091 kb on + strand at 2004.091 kb on + strand at 2004.091 kb on + strand at 2004.092 kb on - strand at 2004.092 kb on - strand at 2004.092 kb on - strand at 2004.092 kb on - strand at 2004.092 kb on - strand at 2004.269 kb on + strand, within Pf1N1B4_1755 at 2004.269 kb on + strand, within Pf1N1B4_1755 at 2004.269 kb on + strand, within Pf1N1B4_1755 at 2004.270 kb on - strand, within Pf1N1B4_1755 at 2004.270 kb on - strand, within Pf1N1B4_1755 at 2004.347 kb on + strand, within Pf1N1B4_1755 at 2004.347 kb on + strand, within Pf1N1B4_1755 at 2004.347 kb on + strand, within Pf1N1B4_1755 at 2004.348 kb on - strand, within Pf1N1B4_1755 at 2004.348 kb on - strand, within Pf1N1B4_1755 at 2004.525 kb on + strand, within Pf1N1B4_1755 at 2004.748 kb on - strand, within Pf1N1B4_1755 at 2004.748 kb on - strand, within Pf1N1B4_1755 at 2004.748 kb on - strand, within Pf1N1B4_1755 at 2005.082 kb on + strand, within Pf1N1B4_1756 at 2005.432 kb on + strand, within Pf1N1B4_1756 at 2005.432 kb on + strand, within Pf1N1B4_1756 at 2005.639 kb on + strand, within Pf1N1B4_1756 at 2005.639 kb on + strand, within Pf1N1B4_1756 at 2005.640 kb on - strand, within Pf1N1B4_1756 at 2005.640 kb on - strand, within Pf1N1B4_1756 at 2005.642 kb on + strand, within Pf1N1B4_1756 at 2005.642 kb on + strand, within Pf1N1B4_1756
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,003,095 + -0.6 2,003,095 + +0.9 2,003,095 + -0.3 2,003,095 + -0.1 2,003,096 - +1.4 2,003,096 - -1.4 2,003,096 - +1.4 2,003,153 + -1.0 2,003,153 + -0.0 2,003,153 + -0.9 2,003,154 - -0.9 2,003,154 - -0.9 2,003,154 - -0.2 2,003,192 + +1.4 2,003,192 + -0.2 2,003,193 - +0.0 2,003,239 + Pf1N1B4_1754 0.11 +0.8 2,003,346 + Pf1N1B4_1754 0.25 +0.3 2,003,363 + Pf1N1B4_1754 0.27 +0.2 2,003,422 + Pf1N1B4_1754 0.35 -0.2 2,003,422 + Pf1N1B4_1754 0.35 +1.0 2,003,422 + Pf1N1B4_1754 0.35 +0.8 2,003,422 + Pf1N1B4_1754 0.35 +1.0 2,003,422 + Pf1N1B4_1754 0.35 +1.1 2,003,809 + Pf1N1B4_1754 0.86 -0.4 2,003,809 + Pf1N1B4_1754 0.86 -2.2 2,003,809 + Pf1N1B4_1754 0.86 -0.2 2,003,809 + Pf1N1B4_1754 0.86 +1.3 2,003,810 - Pf1N1B4_1754 0.86 -0.1 2,003,810 - Pf1N1B4_1754 0.86 -0.6 2,003,972 + +1.4 2,004,041 - +1.4 2,004,066 + +0.3 2,004,066 + -0.6 2,004,066 + -0.2 2,004,067 - +0.6 2,004,067 - -0.0 2,004,068 + +0.7 2,004,068 + -0.9 2,004,068 + -0.2 2,004,068 + +1.4 2,004,068 + -0.3 2,004,069 - -0.2 2,004,069 - +0.7 2,004,069 - +0.4 2,004,069 - +0.7 2,004,069 - +1.6 2,004,069 - -0.2 2,004,091 + -1.8 2,004,091 + +1.0 2,004,091 + +0.5 2,004,091 + +0.1 2,004,092 - +0.4 2,004,092 - +0.3 2,004,092 - -1.6 2,004,092 - +0.4 2,004,092 - +1.2 2,004,269 + Pf1N1B4_1755 0.25 -0.2 2,004,269 + Pf1N1B4_1755 0.25 +1.4 2,004,269 + Pf1N1B4_1755 0.25 -0.2 2,004,270 - Pf1N1B4_1755 0.25 -0.6 2,004,270 - Pf1N1B4_1755 0.25 -0.2 2,004,347 + Pf1N1B4_1755 0.33 -0.7 2,004,347 + Pf1N1B4_1755 0.33 -0.0 2,004,347 + Pf1N1B4_1755 0.33 +0.4 2,004,348 - Pf1N1B4_1755 0.33 -0.0 2,004,348 - Pf1N1B4_1755 0.33 -1.0 2,004,525 + Pf1N1B4_1755 0.52 -0.5 2,004,748 - Pf1N1B4_1755 0.75 -0.7 2,004,748 - Pf1N1B4_1755 0.75 +0.4 2,004,748 - Pf1N1B4_1755 0.75 -2.3 2,005,082 + Pf1N1B4_1756 0.14 -0.9 2,005,432 + Pf1N1B4_1756 0.59 +0.7 2,005,432 + Pf1N1B4_1756 0.59 +0.6 2,005,639 + Pf1N1B4_1756 0.85 -1.2 2,005,639 + Pf1N1B4_1756 0.85 +1.0 2,005,640 - Pf1N1B4_1756 0.85 +0.7 2,005,640 - Pf1N1B4_1756 0.85 -1.3 2,005,642 + Pf1N1B4_1756 0.86 -0.2 2,005,642 + Pf1N1B4_1756 0.86 +0.1
Or see this region's nucleotide sequence