Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_129 and Pf1N1B4_130 are separated by 0 nucleotides Pf1N1B4_130 and Pf1N1B4_131 are separated by 152 nucleotides Pf1N1B4_131 and Pf1N1B4_132 are separated by 326 nucleotides
Pf1N1B4_129 - sensory box histidine kinase/response regulator, at 140,909 to 144,151
_129
Pf1N1B4_130 - DNA-binding response regulator, LuxR family, at 144,152 to 144,772
_130
Pf1N1B4_131 - hypothetical protein, at 144,925 to 145,374
_131
Pf1N1B4_132 - L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis, at 145,701 to 147,038
_132
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 144.234 kb on + strand, within Pf1N1B4_130 at 144.234 kb on + strand, within Pf1N1B4_130 at 144.235 kb on - strand, within Pf1N1B4_130 at 144.235 kb on - strand, within Pf1N1B4_130 at 144.235 kb on - strand, within Pf1N1B4_130 at 144.265 kb on + strand, within Pf1N1B4_130 at 144.265 kb on + strand, within Pf1N1B4_130 at 144.266 kb on - strand, within Pf1N1B4_130 at 144.266 kb on - strand, within Pf1N1B4_130 at 144.266 kb on - strand, within Pf1N1B4_130 at 144.406 kb on - strand, within Pf1N1B4_130 at 144.406 kb on - strand, within Pf1N1B4_130 at 144.474 kb on + strand, within Pf1N1B4_130 at 144.474 kb on + strand, within Pf1N1B4_130 at 144.475 kb on - strand, within Pf1N1B4_130 at 144.475 kb on - strand, within Pf1N1B4_130 at 144.684 kb on + strand, within Pf1N1B4_130 at 144.684 kb on + strand, within Pf1N1B4_130 at 144.685 kb on - strand, within Pf1N1B4_130 at 144.776 kb on - strand at 144.776 kb on - strand at 144.899 kb on + strand at 145.121 kb on + strand, within Pf1N1B4_131 at 145.121 kb on + strand, within Pf1N1B4_131 at 145.121 kb on + strand at 145.121 kb on + strand, within Pf1N1B4_131 at 145.122 kb on - strand, within Pf1N1B4_131 at 145.122 kb on - strand, within Pf1N1B4_131 at 145.122 kb on - strand, within Pf1N1B4_131 at 145.233 kb on - strand, within Pf1N1B4_131 at 145.246 kb on - strand, within Pf1N1B4_131 at 145.353 kb on + strand at 145.447 kb on + strand at 145.475 kb on + strand at 145.475 kb on + strand at 145.476 kb on - strand at 145.476 kb on - strand at 145.486 kb on + strand at 145.487 kb on - strand at 145.487 kb on - strand at 145.487 kb on - strand at 145.487 kb on - strand at 145.487 kb on - strand at 145.702 kb on + strand at 145.703 kb on - strand at 145.768 kb on + strand at 145.768 kb on + strand at 145.769 kb on - strand at 145.861 kb on + strand, within Pf1N1B4_132 at 145.861 kb on + strand, within Pf1N1B4_132 at 145.861 kb on + strand, within Pf1N1B4_132 at 145.861 kb on + strand at 145.861 kb on + strand, within Pf1N1B4_132 at 145.861 kb on + strand, within Pf1N1B4_132 at 145.862 kb on - strand, within Pf1N1B4_132 at 145.862 kb on - strand, within Pf1N1B4_132 at 145.862 kb on - strand at 145.900 kb on + strand at 145.901 kb on - strand, within Pf1N1B4_132 at 145.931 kb on - strand, within Pf1N1B4_132 at 146.149 kb on + strand, within Pf1N1B4_132 at 146.149 kb on + strand, within Pf1N1B4_132 at 146.149 kb on + strand, within Pf1N1B4_132 at 146.149 kb on + strand, within Pf1N1B4_132 at 146.185 kb on + strand, within Pf1N1B4_132 at 146.186 kb on - strand, within Pf1N1B4_132 at 146.186 kb on - strand, within Pf1N1B4_132
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 144,234 + Pf1N1B4_130 0.13 +0.6 144,234 + Pf1N1B4_130 0.13 -0.4 144,235 - Pf1N1B4_130 0.13 -0.6 144,235 - Pf1N1B4_130 0.13 -1.3 144,235 - Pf1N1B4_130 0.13 +1.3 144,265 + Pf1N1B4_130 0.18 -0.3 144,265 + Pf1N1B4_130 0.18 +0.7 144,266 - Pf1N1B4_130 0.18 -1.3 144,266 - Pf1N1B4_130 0.18 -3.1 144,266 - Pf1N1B4_130 0.18 -0.8 144,406 - Pf1N1B4_130 0.41 -0.5 144,406 - Pf1N1B4_130 0.41 -0.8 144,474 + Pf1N1B4_130 0.52 -0.6 144,474 + Pf1N1B4_130 0.52 -1.6 144,475 - Pf1N1B4_130 0.52 -0.3 144,475 - Pf1N1B4_130 0.52 +0.2 144,684 + Pf1N1B4_130 0.86 +1.2 144,684 + Pf1N1B4_130 0.86 -0.1 144,685 - Pf1N1B4_130 0.86 +0.3 144,776 - +0.2 144,776 - -0.3 144,899 + -0.7 145,121 + Pf1N1B4_131 0.44 -0.6 145,121 + Pf1N1B4_131 0.44 +1.3 145,121 + +1.7 145,121 + Pf1N1B4_131 0.44 -0.3 145,122 - Pf1N1B4_131 0.44 -1.0 145,122 - Pf1N1B4_131 0.44 -0.6 145,122 - Pf1N1B4_131 0.44 +1.3 145,233 - Pf1N1B4_131 0.68 +0.0 145,246 - Pf1N1B4_131 0.71 -1.3 145,353 + +0.6 145,447 + +1.2 145,475 + -0.8 145,475 + +1.3 145,476 - +1.0 145,476 - -0.1 145,486 + +2.3 145,487 - -0.5 145,487 - +1.7 145,487 - +1.5 145,487 - -1.3 145,487 - +1.2 145,702 + -0.0 145,703 - +0.7 145,768 + +0.7 145,768 + +0.3 145,769 - +0.1 145,861 + Pf1N1B4_132 0.12 -0.8 145,861 + Pf1N1B4_132 0.12 +1.2 145,861 + Pf1N1B4_132 0.12 -0.8 145,861 + +1.7 145,861 + Pf1N1B4_132 0.12 +3.3 145,861 + Pf1N1B4_132 0.12 -0.4 145,862 - Pf1N1B4_132 0.12 -0.8 145,862 - Pf1N1B4_132 0.12 +0.3 145,862 - +0.7 145,900 + -0.8 145,901 - Pf1N1B4_132 0.15 -1.1 145,931 - Pf1N1B4_132 0.17 -0.7 146,149 + Pf1N1B4_132 0.33 -0.4 146,149 + Pf1N1B4_132 0.33 +1.1 146,149 + Pf1N1B4_132 0.33 -0.2 146,149 + Pf1N1B4_132 0.33 +0.7 146,185 + Pf1N1B4_132 0.36 +0.5 146,186 - Pf1N1B4_132 0.36 -1.7 146,186 - Pf1N1B4_132 0.36 -0.0
Or see this region's nucleotide sequence